C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ras homolog family member C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369642 RHOC-003 ENSG00000155366 9606 - 1:112701131-112707434 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369642
Transcript ID Adrenal Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369642 31.615±0.00 3.148±0.00 28.709±22.86 11.959±10.28 33.147±0.00 9.346±0.00 128.217±125.87 19.485±0.00 128.857±27.19 144.072±12.95 61.937±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006U6 CIL_0006U6_0002 CGP 1:112673141-112707434
CIL_000878 CIL_000878_0001 VISTA 1:112697401-113299438
CIL_0009BY CIL_0009BY_0001 VISTA 1:112697434-113299398

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000910 IDA cytokinesis
GO:0003924 IEA GTPase activity
GO:0004871 IMP signal transducer activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005886 TAS plasma membrane
GO:0006184 IEA GTP catabolic process
GO:0007165 IEA signal transduction
GO:0007264 IEA:TAS small GTPase mediated signal transduction
GO:0007411 TAS axon guidance
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0032154 IDA cleavage furrow
GO:0043123 IMP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043297 IDA apical junction assembly
GO:0051056 TAS regulation of small GTPase mediated signal transduction
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000002303 Rhoc-001 protein_coding Mus_musculus 0 957
ENSMUST00000106787 Rhoc-002 protein_coding Mus_musculus 0 883
ENSMUST00000176347 Rhoc-004 protein_coding Mus_musculus 0 608
ENSMUST00000067384 Rhob-201 protein_coding Mus_musculus 0 388
ENSMUST00000132721 Rhoc-003 processed_transcript Mus_musculus 0 261

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