C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000626_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000036754-ENSDARG00000076153 CGP 7955 23:31596667-31639371
GeneTranscriptPositionBiotype
ENSDARG00000036754 (hmgn3)
high mobility group nucleosomal binding domain 3 		ENSDART00000053367 (hmgn3-001) 31596667-31611386 protein_coding
ENSDART00000135620 (hmgn3-002) 31596690-31611368 protein_coding
ENSDARG00000076153 (lca5)
Leber congenital amaurosis 5 		ENSDART00000112619 (lca5-201) 31614732-31634923 protein_coding
ENSDART00000132736 (lca5-001) 31619186-31639371 protein_coding

Danio rerio Ensembl (Zv9)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_000626_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000118418-ENSG00000135338 CGP 9606 6:79201245-79537458
GeneTranscriptPositionBiotype
ENSG00000118418 (HMGN3)
high mobility group nucleosomal binding domain 3 		ENST00000275036 (HMGN3-002) 79201245-79234689 protein_coding
ENST00000344726 (HMGN3-001) 79201245-79234689 protein_coding
ENST00000620514 (HMGN3-201) 79201249-79234738 protein_coding
ENSG00000135338 (LCA5)
Leber congenital amaurosis 5 		ENST00000369846 (LCA5-001) 79484991-79537408 protein_coding
ENST00000392959 (LCA5-002) 79484991-79537430 protein_coding
ENST00000467898 (LCA5-003) 79487828-79537458 protein_coding
ENSG00000217786 (RP3-508D13.1)
 ENST00000405542 (RP3-508D13.1-001) 79326568-79327207 processed_pseudogene
ENSG00000218029 (RP1-232L24.2)
 ENST00000444542 (RP1-232L24.2-001) 79354443-79354713 processed_pseudogene
ENSG00000218748 (DBIP1)
diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) pseudogene 1 		ENST00000401435 (DBIP1-001) 79436908-79437167 processed_pseudogene
ENSG00000220154 (RP11-46B11.2)
 ENST00000406706 (RP11-46B11.2-001) 79278105-79278427 processed_pseudogene
ENSG00000231533 (RP1-232L24.3)
 ENST00000429444 (RP1-232L24.3-001) 79420297-79421305 lincRNA
ENSG00000270362 (HMGN3-AS1)
HMGN3 antisense RNA 1 		ENST00000604516 (HMGN3-AS1-001) 79233718-79236797 antisense

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_000626_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000066456-ENSMUSG00000032258 CGP 10090 9:83109948-83441127
GeneTranscriptPositionBiotype
ENSMUSG00000032258 (Lca5)
Leber congenital amaurosis 5 (human) 		ENSMUST00000034791 (Lca5-001) 83393419-83441027 protein_coding
ENSMUST00000034793 (Lca5-002) 83391364-83441127 protein_coding
ENSMUST00000186802 (Lca5-007) 83423223-83434723 protein_coding
ENSMUST00000188548 (Lca5-005) 83426749-83441116 protein_coding
ENSMUST00000188907 (Lca5-006) 83426840-83441062 processed_transcript
ENSMUST00000190373 (Lca5-003) 83422247-83441093 retained_intron
ENSMUST00000190514 (Lca5-004) 83390293-83426961 nonsense_mediated_decay
ENSMUST00000190557 (Lca5-009) 83423428-83426969 retained_intron
ENSMUST00000191225 (Lca5-008) 83400635-83401869 retained_intron
ENSMUSG00000058838 (Rps27a-ps2)
ribosomal protein S27A, pseudogene 2 		ENSMUST00000078766 (Rps27a-ps2-001) 83409660-83410126 processed_pseudogene
ENSMUSG00000066456 (Hmgn3)
high mobility group nucleosomal binding domain 3 		ENSMUST00000161796 (Hmgn3-002) 83109948-83146605 protein_coding
ENSMUST00000162246 (Hmgn3-001) 83109948-83146685 protein_coding
ENSMUST00000185315 (Hmgn3-003) 83109948-83146530 protein_coding
ENSMUST00000185359 (Hmgn3-008) 83110720-83111093 retained_intron
ENSMUST00000187193 (Hmgn3-006) 83109948-83146470 protein_coding
ENSMUST00000189777 (Hmgn3-007) 83109948-83110825 processed_transcript
ENSMUST00000190154 (Hmgn3-004) 83110378-83146517 nonsense_mediated_decay
ENSMUST00000190580 (Hmgn3-009) 83109968-83111131 retained_intron
ENSMUST00000191105 (Hmgn3-005) 83110181-83112568 retained_intron
ENSMUSG00000098747 (Gm27216)
predicted gene 27216 		ENSMUST00000184080 (Gm27216-001) 83240508-83254487 lincRNA
ENSMUST00000184100 (Gm27216-002) 83240491-83254540 lincRNA
ENSMUST00000184605 (Gm27216-003) 83240481-83254022 lincRNA
ENSMUSG00000099718 (RP23-72A20.9)
predicted gene 2087 		ENSMUST00000188217 (RP23-72A20.9-001) 83431547-83454573 antisense
ENSMUSG00000101144 (RP23-13G1.4)
predicted gene 29054 		ENSMUST00000187589 (RP23-13G1.4-001) 83145946-83147281 antisense

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000626_0001ENSDARG00000036754ENSDART00000053367ENSDART00000135620ENSDARG00000076153ENSDART00000112619ENSDART00000132736CIL_000626_0002ENSG00000118418ENST00000275036ENST00000344726ENST00000620514ENSG00000135338ENST00000369846ENST00000392959ENST00000467898ENSG00000217786ENST00000405542ENSG00000218029ENST00000444542ENSG00000218748ENST00000401435ENSG00000220154ENST00000406706ENSG00000231533ENST00000429444ENSG00000270362ENST00000604516CIL_000626_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000626_0001ENSDARG00000036754ENSDART00000053367ENSDART00000135620ENSDARG00000076153ENSDART00000112619ENSDART00000132736CIL_000626_0002ENSG00000118418ENST00000275036ENST00000344726ENST00000620514ENSG00000135338ENST00000369846ENST00000392959ENSG00000217786ENST00000405542ENSG00000218029ENST00000444542ENSG00000218748ENST00000401435ENSG00000220154ENST00000406706ENSG00000231533ENST00000429444ENSG00000270362ENST00000604516CIL_000626_0003ENSMUSG00000032258ENSMUST00000034791ENSMUST00000034793ENSMUST00000186802ENSMUST00000188907ENSMUSG00000058838ENSMUST00000078766ENSMUSG00000066456ENSMUST00000161796ENSMUST00000162246ENSMUST00000185315ENSMUST00000185359ENSMUST00000187193ENSMUST00000189777ENSMUST00000190154ENSMUST00000190580ENSMUSG00000098747ENSMUST00000184080ENSMUST00000184100ENSMUST00000184605ENSMUSG00000099718ENSMUST00000188217ENSMUSG00000101144ENSMUST00000187589
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000036754 ENSDART00000053367 N/A N/A N/A 78.210±47.34 N/A N/A 37.265±21.43 29.802±12.19 0.323±0.00 N/A 6.335±0.00 N/A N/A N/A
ENSDART00000135620 N/A N/A N/A N/A N/A N/A 12.591±0.23 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000076153 ENSDART00000112619 N/A N/A N/A 0.223±0.06 N/A N/A 0.213±0.10 0.164±0.02 N/A N/A 0.169±0.00 N/A N/A N/A
ENSDART00000132736 N/A N/A N/A 1.436±0.00 N/A N/A 0.314±0.00 2.489±0.00 0.080±0.00 N/A 0.105±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000118418 ENST00000275036 7.043±0.00 9.709±0.00 3.385±0.00 6.009±0.67 9.370±5.67 7.310±4.97 7.612±5.59 19.231±10.68 4.285±0.95 9.617±5.36 2.920±0.00 20.970±10.60 45.301±25.72 29.751±6.29
ENST00000344726 3.267±0.00 14.025±0.00 4.630±0.00 9.773±4.18 4.516±2.74 5.593±3.18 N/A 11.571±9.69 7.353±0.00 8.873±0.00 N/A 17.652±9.69 24.616±7.95 24.269±1.76
ENST00000620514 1.253±0.00 3.984±0.00 N/A 7.397±0.00 7.425±0.00 3.157±0.00 41.065±0.00 9.815±0.00 3.332±0.00 N/A 6.137±0.00 N/A N/A N/A
ENSG00000135338 ENST00000369846 1.361±0.00 0.852±0.00 0.302±0.00 1.820±0.60 1.000±0.10 1.713±0.00 0.466±0.00 1.362±0.00 1.168±1.03 1.678±0.95 0.254±0.00 1.630±0.63 0.611±0.17 4.232±0.43
ENST00000392959 N/A N/A N/A N/A 0.224±0.01 0.623±0.00 0.075±0.00 N/A 0.294±0.00 0.521±0.00 0.220±0.00 0.585±0.10 0.199±0.00 0.501±0.00
ENST00000467898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000217786 ENST00000405542 N/A 0.037±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000218029 ENST00000444542 N/A N/A N/A 0.075±0.00 0.073±0.00 0.067±0.00 N/A 0.220±0.00 N/A 0.077±0.00 N/A N/A N/A N/A
ENSG00000218748 ENST00000401435 N/A 0.063±0.00 N/A 0.066±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.097±0.00
ENSG00000220154 ENST00000406706 N/A 0.510±0.00 N/A 0.208±0.00 0.292±0.00 N/A N/A N/A N/A N/A N/A 0.120±0.00 0.140±0.01 0.408±0.00
ENSG00000231533 ENST00000429444 N/A N/A N/A 1.265±0.58 N/A N/A N/A 0.237±0.00 N/A 0.082±0.00 N/A 0.227±0.08 0.218±0.00 N/A
ENSG00000270362 ENST00000604516 0.435±0.00 N/A 0.502±0.00 0.682±0.00 0.397±0.00 1.228±0.00 N/A N/A 0.318±0.00 N/A 0.622±0.00 0.886±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032258 ENSMUST00000034791 0.441±0.03 0.328±0.07 1.465±0.22 3.840±1.21 0.302±0.11 0.255±0.17 N/A 0.195±0.10 0.169±0.13 1.049±0.04 0.259±0.00 1.138±0.49 0.909±0.06 0.903±0.12
ENSMUST00000034793 N/A N/A N/A N/A 0.205±0.07 N/A N/A N/A 0.030±0.00 N/A N/A 1.614±0.00 N/A N/A
ENSMUST00000186802 N/A N/A N/A N/A N/A N/A N/A N/A 0.104±0.03 N/A N/A N/A N/A N/A
ENSMUST00000188548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188907 N/A 0.528±0.24 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190557 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000191225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000058838 ENSMUST00000078766 1.366±0.29 N/A 3.064±1.99 1.859±0.00 0.982±0.90 0.587±0.30 0.585±0.32 0.435±0.19 3.830±4.00 0.146±0.00 0.501±0.18 0.672±0.53 0.729±0.59 0.196±0.07
ENSMUSG00000066456 ENSMUST00000161796 N/A 5.086±0.75 19.876±1.89 13.117±2.57 1.806±0.00 N/A N/A 1.527±0.00 0.644±0.35 N/A 0.900±0.27 6.421±2.69 1.340±0.57 1.382±0.94
ENSMUST00000162246 N/A N/A 9.975±0.08 N/A N/A N/A N/A N/A 0.469±0.11 N/A 0.608±0.23 3.805±1.51 1.085±0.30 N/A
ENSMUST00000185315 6.489±0.38 8.287±1.13 21.364±7.08 19.546±13.34 5.267±3.08 1.524±0.43 1.828±0.34 2.317±0.41 0.539±0.30 2.690±1.15 0.558±0.17 4.276±1.48 0.749±0.61 1.181±0.56
ENSMUST00000185359 N/A N/A N/A N/A N/A 7.323±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187193 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.390±0.00 N/A
ENSMUST00000189777 N/A N/A N/A N/A N/A N/A 1.812±0.00 2.392±0.00 0.262±0.00 2.427±0.00 N/A N/A N/A N/A
ENSMUST00000190154 N/A N/A N/A 23.015±0.00 N/A N/A N/A N/A N/A 0.875±0.00 0.547±0.00 10.740±0.00 2.603±0.00 2.326±0.00
ENSMUST00000190580 N/A N/A N/A N/A N/A N/A N/A 2.133±0.00 0.491±0.17 N/A 0.751±0.20 5.600±0.42 1.020±0.00 1.396±0.00
ENSMUST00000191105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000098747 ENSMUST00000184080 0.115±0.00 0.480±0.00 0.058±0.00 N/A N/A N/A N/A 2.487±0.16 3.243±0.62 N/A N/A N/A 0.434±0.00 N/A
ENSMUST00000184100 N/A 0.582±0.18 N/A N/A N/A N/A N/A 5.316±0.78 39.643±26.37 N/A N/A 0.346±0.00 1.232±0.33 0.710±0.00
ENSMUST00000184605 N/A 0.220±0.01 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.750±0.19
ENSMUSG00000099718 ENSMUST00000188217 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.065±0.35
ENSMUSG00000101144 ENSMUST00000187589 N/A 1.142±0.51 N/A N/A N/A 0.380±0.00 N/A N/A 0.050±0.00 0.175±0.00 N/A 0.381±0.12 N/A 0.235±0.00

Loading