C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000626_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000036754-ENSDARG00000076153 CGP 7955 23:31596667-31639371
GeneTranscriptPositionBiotype
ENSDARG00000036754 (hmgn3)
high mobility group nucleosomal binding domain 3 		ENSDART00000053367 (hmgn3-001) 31596667-31611386 protein_coding
ENSDART00000135620 (hmgn3-002) 31596690-31611368 protein_coding
ENSDARG00000076153 (lca5)
Leber congenital amaurosis 5 		ENSDART00000112619 (lca5-201) 31614732-31634923 protein_coding
ENSDART00000132736 (lca5-001) 31619186-31639371 protein_coding
CIL_000626_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000118418-ENSG00000135338 CGP 9606 6:79201245-79537458
GeneTranscriptPositionBiotype
ENSG00000118418 (HMGN3)
high mobility group nucleosomal binding domain 3 		ENST00000275036 (HMGN3-002) 79201245-79234689 protein_coding
ENST00000344726 (HMGN3-001) 79201245-79234689 protein_coding
ENST00000620514 (HMGN3-201) 79201249-79234738 protein_coding
ENSG00000135338 (LCA5)
Leber congenital amaurosis 5 		ENST00000369846 (LCA5-001) 79484991-79537408 protein_coding
ENST00000392959 (LCA5-002) 79484991-79537430 protein_coding
ENST00000467898 (LCA5-003) 79487828-79537458 protein_coding
ENSG00000217786 (RP3-508D13.1)
 ENST00000405542 (RP3-508D13.1-001) 79326568-79327207 processed_pseudogene
ENSG00000218029 (RP1-232L24.2)
 ENST00000444542 (RP1-232L24.2-001) 79354443-79354713 processed_pseudogene
ENSG00000218748 (DBIP1)
diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) pseudogene 1 		ENST00000401435 (DBIP1-001) 79436908-79437167 processed_pseudogene
ENSG00000220154 (RP11-46B11.2)
 ENST00000406706 (RP11-46B11.2-001) 79278105-79278427 processed_pseudogene
ENSG00000231533 (RP1-232L24.3)
 ENST00000429444 (RP1-232L24.3-001) 79420297-79421305 lincRNA
ENSG00000270362 (HMGN3-AS1)
HMGN3 antisense RNA 1 		ENST00000604516 (HMGN3-AS1-001) 79233718-79236797 antisense
CIL_000626_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000066456-ENSMUSG00000032258 CGP 10090 9:83109948-83441127
GeneTranscriptPositionBiotype
ENSMUSG00000032258 (Lca5)
Leber congenital amaurosis 5 (human) 		ENSMUST00000034791 (Lca5-001) 83393419-83441027 protein_coding
ENSMUST00000034793 (Lca5-002) 83391364-83441127 protein_coding
ENSMUST00000186802 (Lca5-007) 83423223-83434723 protein_coding
ENSMUST00000188548 (Lca5-005) 83426749-83441116 protein_coding
ENSMUST00000188907 (Lca5-006) 83426840-83441062 processed_transcript
ENSMUST00000190373 (Lca5-003) 83422247-83441093 retained_intron
ENSMUST00000190514 (Lca5-004) 83390293-83426961 nonsense_mediated_decay
ENSMUST00000190557 (Lca5-009) 83423428-83426969 retained_intron
ENSMUST00000191225 (Lca5-008) 83400635-83401869 retained_intron
ENSMUSG00000058838 (Rps27a-ps2)
ribosomal protein S27A, pseudogene 2 		ENSMUST00000078766 (Rps27a-ps2-001) 83409660-83410126 processed_pseudogene
ENSMUSG00000066456 (Hmgn3)
high mobility group nucleosomal binding domain 3 		ENSMUST00000161796 (Hmgn3-002) 83109948-83146605 protein_coding
ENSMUST00000162246 (Hmgn3-001) 83109948-83146685 protein_coding
ENSMUST00000185315 (Hmgn3-003) 83109948-83146530 protein_coding
ENSMUST00000185359 (Hmgn3-008) 83110720-83111093 retained_intron
ENSMUST00000187193 (Hmgn3-006) 83109948-83146470 protein_coding
ENSMUST00000189777 (Hmgn3-007) 83109948-83110825 processed_transcript
ENSMUST00000190154 (Hmgn3-004) 83110378-83146517 nonsense_mediated_decay
ENSMUST00000190580 (Hmgn3-009) 83109968-83111131 retained_intron
ENSMUST00000191105 (Hmgn3-005) 83110181-83112568 retained_intron
ENSMUSG00000098747 (Gm27216)
predicted gene 27216 		ENSMUST00000184080 (Gm27216-001) 83240508-83254487 lincRNA
ENSMUST00000184100 (Gm27216-002) 83240491-83254540 lincRNA
ENSMUST00000184605 (Gm27216-003) 83240481-83254022 lincRNA
ENSMUSG00000099718 (RP23-72A20.9)
predicted gene 2087 		ENSMUST00000188217 (RP23-72A20.9-001) 83431547-83454573 antisense
ENSMUSG00000101144 (RP23-13G1.4)
predicted gene 29054 		ENSMUST00000187589 (RP23-13G1.4-001) 83145946-83147281 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000626_0001ENSDARG00000036754ENSDART00000053367ENSDART00000135620ENSDARG00000076153ENSDART00000112619ENSDART00000132736CIL_000626_0002ENSG00000118418ENST00000275036ENST00000344726ENST00000620514ENSG00000135338ENST00000369846ENST00000392959ENST00000467898ENSG00000217786ENST00000405542ENSG00000218029ENST00000444542ENSG00000218748ENST00000401435ENSG00000220154ENST00000406706ENSG00000231533ENST00000429444ENSG00000270362ENST00000604516CIL_000626_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000626_0001ENSDARG00000036754ENSDART00000053367ENSDART00000135620ENSDARG00000076153ENSDART00000112619ENSDART00000132736CIL_000626_0002ENSG00000118418ENST00000275036ENST00000344726ENST00000620514ENSG00000135338ENST00000369846ENST00000392959ENSG00000217786ENST00000405542ENSG00000218029ENST00000444542ENSG00000218748ENST00000401435ENSG00000220154ENST00000406706ENSG00000231533ENST00000429444ENSG00000270362ENST00000604516CIL_000626_0003ENSMUSG00000032258ENSMUST00000034791ENSMUST00000034793ENSMUST00000186802ENSMUST00000188907ENSMUSG00000058838ENSMUST00000078766ENSMUSG00000066456ENSMUST00000161796ENSMUST00000162246ENSMUST00000185315ENSMUST00000185359ENSMUST00000187193ENSMUST00000189777ENSMUST00000190154ENSMUST00000190580ENSMUSG00000098747ENSMUST00000184080ENSMUST00000184100ENSMUST00000184605ENSMUSG00000099718ENSMUST00000188217ENSMUSG00000101144ENSMUST00000187589
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000036754 ENSDART00000053367 N/A N/A N/A 78.210±47.34 N/A N/A 37.265±21.43 29.802±12.19 0.323±0.00 N/A 6.335±0.00 N/A N/A N/A
ENSDART00000135620 N/A N/A N/A N/A N/A N/A 12.591±0.23 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000076153 ENSDART00000112619 N/A N/A N/A 0.223±0.06 N/A N/A 0.213±0.10 0.164±0.02 N/A N/A 0.169±0.00 N/A N/A N/A
ENSDART00000132736 N/A N/A N/A 1.436±0.00 N/A N/A 0.314±0.00 2.489±0.00 0.080±0.00 N/A 0.105±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000118418 ENST00000275036 7.043±0.00 9.709±0.00 3.385±0.00 6.009±0.67 9.370±5.67 7.310±4.97 7.612±5.59 19.231±10.68 4.285±0.95 9.617±5.36 2.920±0.00 20.970±10.60 45.301±25.72 29.751±6.29
ENST00000344726 3.267±0.00 14.025±0.00 4.630±0.00 9.773±4.18 4.516±2.74 5.593±3.18 N/A 11.571±9.69 7.353±0.00 8.873±0.00 N/A 17.652±9.69 24.616±7.95 24.269±1.76
ENST00000620514 1.253±0.00 3.984±0.00 N/A 7.397±0.00 7.425±0.00 3.157±0.00 41.065±0.00 9.815±0.00 3.332±0.00 N/A 6.137±0.00 N/A N/A N/A
ENSG00000135338 ENST00000369846 1.361±0.00 0.852±0.00 0.302±0.00 1.820±0.60 1.000±0.10 1.713±0.00 0.466±0.00 1.362±0.00 1.168±1.03 1.678±0.95 0.254±0.00 1.630±0.63 0.611±0.17 4.232±0.43
ENST00000392959 N/A N/A N/A N/A 0.224±0.01 0.623±0.00 0.075±0.00 N/A 0.294±0.00 0.521±0.00 0.220±0.00 0.585±0.10 0.199±0.00 0.501±0.00
ENST00000467898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000217786 ENST00000405542 N/A 0.037±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000218029 ENST00000444542 N/A N/A N/A 0.075±0.00 0.073±0.00 0.067±0.00 N/A 0.220±0.00 N/A 0.077±0.00 N/A N/A N/A N/A
ENSG00000218748 ENST00000401435 N/A 0.063±0.00 N/A 0.066±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.097±0.00
ENSG00000220154 ENST00000406706 N/A 0.510±0.00 N/A 0.208±0.00 0.292±0.00 N/A N/A N/A N/A N/A N/A 0.120±0.00 0.140±0.01 0.408±0.00
ENSG00000231533 ENST00000429444 N/A N/A N/A 1.265±0.58 N/A N/A N/A 0.237±0.00 N/A 0.082±0.00 N/A 0.227±0.08 0.218±0.00 N/A
ENSG00000270362 ENST00000604516 0.435±0.00 N/A 0.502±0.00 0.682±0.00 0.397±0.00 1.228±0.00 N/A N/A 0.318±0.00 N/A 0.622±0.00 0.886±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032258 ENSMUST00000034791 0.441±0.03 0.328±0.07 1.465±0.22 3.840±1.21 0.302±0.11 0.255±0.17 N/A 0.195±0.10 0.169±0.13 1.049±0.04 0.259±0.00 1.138±0.49 0.909±0.06 0.903±0.12
ENSMUST00000034793 N/A N/A N/A N/A 0.205±0.07 N/A N/A N/A 0.030±0.00 N/A N/A 1.614±0.00 N/A N/A
ENSMUST00000186802 N/A N/A N/A N/A N/A N/A N/A N/A 0.104±0.03 N/A N/A N/A N/A N/A
ENSMUST00000188548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188907 N/A 0.528±0.24 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190557 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000191225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000058838 ENSMUST00000078766 1.366±0.29 N/A 3.064±1.99 1.859±0.00 0.982±0.90 0.587±0.30 0.585±0.32 0.435±0.19 3.830±4.00 0.146±0.00 0.501±0.18 0.672±0.53 0.729±0.59 0.196±0.07
ENSMUSG00000066456 ENSMUST00000161796 N/A 5.086±0.75 19.876±1.89 13.117±2.57 1.806±0.00 N/A N/A 1.527±0.00 0.644±0.35 N/A 0.900±0.27 6.421±2.69 1.340±0.57 1.382±0.94
ENSMUST00000162246 N/A N/A 9.975±0.08 N/A N/A N/A N/A N/A 0.469±0.11 N/A 0.608±0.23 3.805±1.51 1.085±0.30 N/A
ENSMUST00000185315 6.489±0.38 8.287±1.13 21.364±7.08 19.546±13.34 5.267±3.08 1.524±0.43 1.828±0.34 2.317±0.41 0.539±0.30 2.690±1.15 0.558±0.17 4.276±1.48 0.749±0.61 1.181±0.56
ENSMUST00000185359 N/A N/A N/A N/A N/A 7.323±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187193 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.390±0.00 N/A
ENSMUST00000189777 N/A N/A N/A N/A N/A N/A 1.812±0.00 2.392±0.00 0.262±0.00 2.427±0.00 N/A N/A N/A N/A
ENSMUST00000190154 N/A N/A N/A 23.015±0.00 N/A N/A N/A N/A N/A 0.875±0.00 0.547±0.00 10.740±0.00 2.603±0.00 2.326±0.00
ENSMUST00000190580 N/A N/A N/A N/A N/A N/A N/A 2.133±0.00 0.491±0.17 N/A 0.751±0.20 5.600±0.42 1.020±0.00 1.396±0.00
ENSMUST00000191105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000098747 ENSMUST00000184080 0.115±0.00 0.480±0.00 0.058±0.00 N/A N/A N/A N/A 2.487±0.16 3.243±0.62 N/A N/A N/A 0.434±0.00 N/A
ENSMUST00000184100 N/A 0.582±0.18 N/A N/A N/A N/A N/A 5.316±0.78 39.643±26.37 N/A N/A 0.346±0.00 1.232±0.33 0.710±0.00
ENSMUST00000184605 N/A 0.220±0.01 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.750±0.19
ENSMUSG00000099718 ENSMUST00000188217 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.065±0.35
ENSMUSG00000101144 ENSMUST00000187589 N/A 1.142±0.51 N/A N/A N/A 0.380±0.00 N/A N/A 0.050±0.00 0.175±0.00 N/A 0.381±0.12 N/A 0.235±0.00

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