C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369905 ACTR1A-001 ENSG00000138107 9606 - 10:102479229-102502711 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369905
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369905 43.077±0.00 33.136±0.00 4.302±0.00 40.999±14.58 23.585±14.37 23.053±12.07 20.303±13.19 21.738±17.32 13.958±2.91 31.944±22.14 58.459±45.41 26.373±9.92 49.621±6.05 45.051±2.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005WL CIL_0005WL_0001 CGP 10:102461395-102502711
CIL_0008MQ CIL_0008MQ_0001 VISTA 10:102469546-103070739
CIL_0005WM CIL_0005WM_0001 CGP 10:102479229-102633535

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0005829 TAS cytosol
GO:0005869 TAS dynactin complex
GO:0005875 TAS microtubule associated complex
GO:0016192 TAS vesicle-mediated transport
GO:0019886 TAS antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040270 Actr1a-201 protein_coding Mus_musculus 0 1895
ENSMUST00000176112 Gm8488-001 processed_pseudogene Mus_musculus 0 647

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