C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ARP1 actin-related protein 1A, centractin alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040270 Actr1a-201 ENSMUSG00000025228 10090 - 19:46376814-46395735 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040270
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040270 54.047±10.75 42.810±2.45 37.528±1.09 84.381±17.10 44.810±6.21 50.341±4.80 30.401±3.25 35.098±0.88 23.236±3.15 50.850±1.03 26.913±0.97 47.546±2.08 55.907±10.74 84.708±21.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MQ CIL_0008MQ_0002 VISTA 19:46318498-46919738
CIL_0005WL CIL_0005WL_0002 CGP 19:46341121-46395735
CIL_0005WM CIL_0005WM_0002 CGP 19:46376814-46488804

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005813 IEA centrosome
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000289228 ACTR1B-001 protein_coding Homo_sapiens 0 830
ENST00000369905 ACTR1A-001 protein_coding Homo_sapiens 0 1895
ENST00000418944 AC092664.1-001 processed_pseudogene Homo_sapiens 0 1064
ENST00000451664 ACTR1B-002 retained_intron Homo_sapiens 0 436
ENST00000460427 ACTR1B-003 retained_intron Homo_sapiens 0 263
ENST00000470322 ACTR1A-003 processed_transcript Homo_sapiens 0 804
ENST00000480947 ACTR1A-005 processed_transcript Homo_sapiens 0 555
ENST00000481044 ACTR1A-006 processed_transcript Homo_sapiens 0 833
ENST00000487599 ACTR1A-002 protein_coding Homo_sapiens 0 1284
ENST00000494549 ACTR1A-004 processed_transcript Homo_sapiens 0 398

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