C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: host cell factor C1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369984 HCFC1-003 ENSG00000172534 9606 - X:153947559-153971184 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLiverLungTestisENST00000369984
Transcript ID Adipose Adrenal Brain Breast Colon Liver Lung Testis
ENST00000369984 1.758±0.00 2.507±0.00 1.245±0.00 0.378±0.00 2.474±0.00 0.979±0.00 0.921±0.00 2.363±1.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001LC CIL_0001LC_0001 CGP X:153935263-153971807

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005739 IDA mitochondrion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114372 Hcfc1-005 protein_coding Mus_musculus 0 4527
ENSMUST00000033761 Hcfc1-001 protein_coding Mus_musculus 0 4527
ENSMUST00000128136 Hcfc1-002 protein_coding Mus_musculus 0 2013
ENSMUST00000131091 Hcfc1-006 processed_transcript Mus_musculus 0 935
ENSMUST00000128325 Hcfc1-008 processed_transcript Mus_musculus 0 573
ENSMUST00000156204 Hcfc1-007 retained_intron Mus_musculus 0 538
ENSDART00000019533 hcfc1b-201 protein_coding Danio_rerio 0 392
ENSDART00000132536 hcfc1b-001 protein_coding Danio_rerio 0 392
ENSDART00000138323 hcfc1b-002 retained_intron Danio_rerio 0 381

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