C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre-mRNA processing factor 38B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370025 PRPF38B-001 ENSG00000134186 9606 + 1:108692323-108701803 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370025
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370025 6.641±0.00 5.906±0.00 0.468±0.00 2.914±2.10 3.481±2.39 8.564±7.42 2.572±2.30 4.655±3.99 1.892±0.20 11.006±0.00 4.086±3.68 6.579±3.75 7.308±2.91 11.813±2.58

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029480 Prpf38b-001 protein_coding Mus_musculus 0 2732
ENSMUST00000129273 Prpf38b-003 processed_transcript Mus_musculus 0 2167
ENSMUST00000125208 Prpf38b-006 processed_transcript Mus_musculus 0 841
ENSMUST00000127478 Prpf38b-005 processed_transcript Mus_musculus 0 645
ENSMUST00000145720 Prpf38b-002 processed_transcript Mus_musculus 0 564
ENSMUST00000156808 Prpf38b-004 processed_transcript Mus_musculus 0 466

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