C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000145720 Prpf38b-002 ENSMUSG00000027881 10090 - 3:108906561-108911710 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000145720
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000145720 10.323±2.33 63.321±25.35 12.262±6.39 12.296±10.20 2.034±0.00 3.847±0.56 4.555±2.33 9.455±2.48 19.942±8.56 5.439±0.00 4.494±1.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EP CIL_0007EP_0002 CGP 3:108853678-108911727

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000285298 MRPS17-001 protein_coding Homo_sapiens 0.00003 55
ENST00000370021 PRPF38B-002 protein_coding Homo_sapiens 0 1035
ENST00000370022 PRPF38B-004 protein_coding Homo_sapiens 0 564
ENST00000370025 PRPF38B-001 protein_coding Homo_sapiens 0 564
ENST00000420890 CCDC141-201 protein_coding Homo_sapiens 0.00001 58
ENST00000467302 PRPF38B-003 processed_transcript Homo_sapiens 0 1105
ENST00000523822 ANXA13-003 retained_intron Homo_sapiens 0.00001 57

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