C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029480 Prpf38b-001 ENSMUSG00000027881 10090 - 3:108902807-108911727 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029480
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029480 7.163±1.99 10.621±0.47 19.855±0.06 16.218±5.19 4.343±0.76 4.924±0.99 2.772±0.61 5.823±1.03 12.880±11.00 9.198±1.07 2.903±0.54 18.185±7.01 14.915±2.58 8.901±6.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EP CIL_0007EP_0002 CGP 3:108853678-108911727

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370021 PRPF38B-002 protein_coding Homo_sapiens 0 2167
ENST00000370022 PRPF38B-004 protein_coding Homo_sapiens 0 966
ENST00000370025 PRPF38B-001 protein_coding Homo_sapiens 0 2732
ENST00000467302 PRPF38B-003 processed_transcript Homo_sapiens 0 564
ENST00000485810 PRPF38B-005 processed_transcript Homo_sapiens 0 555

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