C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pre-mRNA processing factor 38B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000134186 PRPF38B 9606 + 1:108692323-108701803 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000370021 PRPF38B-002 108692341-108701803 protein_coding
  ENST00000370022 PRPF38B-004 108692324-108697504 protein_coding
  ENST00000370025 PRPF38B-001 108692323-108701803 protein_coding
  ENST00000467302 PRPF38B-003 108692327-108697504 processed_transcript
  ENST00000485810 PRPF38B-005 108697700-108699385 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370021ENST00000370022ENST00000370025ENST00000485810
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370021 2.045±0.00 7.031±0.00 N/A 1.699±0.00 N/A N/A N/A N/A N/A 0.548±0.00 N/A 9.285±0.00 3.116±0.00 4.802±0.00
ENST00000370022 N/A N/A N/A N/A N/A N/A 0.371±0.00 0.767±0.00 1.295±0.00 N/A 2.009±0.00 N/A N/A N/A
ENST00000370025 6.641±0.00 5.906±0.00 0.468±0.00 2.914±2.10 3.481±2.39 8.564±7.42 2.572±2.30 4.655±3.99 1.892±0.20 11.006±0.00 4.086±3.68 6.579±3.75 7.308±2.91 11.813±2.58
ENST00000485810 N/A N/A 0.952±0.00 1.390±0.00 2.452±0.00 3.581±0.00 1.165±0.00 0.992±0.00 2.223±0.00 4.923±0.00 N/A 1.722±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053101 prpf38b PRP38 pre-mRNA processing factor 38 (yeast) domain containing B protein_coding Danio_rerio
ENSMUSG00000027881 Prpf38b PRP38 pre-mRNA processing factor 38 (yeast) domain containing B protein_coding Mus_musculus

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