C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myotubularin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370396 MTM1-002 ENSG00000171100 9606 + X:150568619-150673322 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainHeartKidneyLungMuscleOvaryPlacentaTestisENST00000370396
Transcript ID Adipose Adrenal Bladder Brain Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000370396 1.916±0.00 0.458±0.00 0.272±0.00 1.193±0.03 0.167±0.00 0.535±0.00 0.867±0.00 0.490±0.07 1.808±0.62 1.077±0.32 2.613±1.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001AS CIL_0001AS_0001 CGP X:150361422-150673322
CIL_0000PJ CIL_0000PJ_0002 CGP X:150568619-150765103

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001726 IDA ruffle
GO:0004438 IDA phosphatidylinositol-3-phosphatase activity
GO:0004721 IDA phosphoprotein phosphatase activity
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005770 IDA late endosome
GO:0005829 TAS cytosol
GO:0005886 IDA plasma membrane
GO:0006470 IDA protein dephosphorylation
GO:0006644 TAS phospholipid metabolic process
GO:0006661 TAS phosphatidylinositol biosynthetic process
GO:0008333 IDA endosome to lysosome transport
GO:0015031 IEA protein transport
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0019215 IDA intermediate filament binding
GO:0030175 IDA filopodium
GO:0031674 IEA I band
GO:0035091 IDA phosphatidylinositol binding
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0044088 IDA regulation of vacuole organization
GO:0044281 TAS small molecule metabolic process
GO:0045109 IMP intermediate filament organization
GO:0046716 IEA muscle cell cellular homeostasis
GO:0046856 IDA phosphatidylinositol dephosphorylation
GO:0048311 IMP mitochondrion distribution
GO:0052629 IDA phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity
GO:0070062 IDA extracellular vesicular exosome
GO:0070584 IDA mitochondrion morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000061970 Mtm1-202 protein_coding Mus_musculus 0 2590
ENSMUST00000033700 Mtm1-001 protein_coding Mus_musculus 0 2590
ENSMUST00000171933 Mtm1-203 protein_coding Mus_musculus 0 2547
ENSMUST00000114617 Mtm1-002 protein_coding Mus_musculus 0 2547
ENSMUST00000156452 Mtm1-008 retained_intron Mus_musculus 0 2091
ENSMUST00000025391 Mtm1-201 protein_coding Mus_musculus 0 1646
ENSMUST00000114621 Mtm1-003 protein_coding Mus_musculus 0 1646
ENSMUST00000126208 Mtm1-010 retained_intron Mus_musculus 0 1402
ENSMUST00000129722 Mtm1-009 retained_intron Mus_musculus 0 832
ENSMUST00000134859 Mtm1-007 retained_intron Mus_musculus 0 784
ENSMUST00000101501 Mtm1-004 protein_coding Mus_musculus 0 621
ENSMUST00000152810 Mtm1-006 retained_intron Mus_musculus 0 486
ENSMUST00000151415 Mtm1-005 retained_intron Mus_musculus 0 298

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