C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 9, subfamily A (NHE6, cation proton antiporter 6), member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370695 SLC9A6-002 ENSG00000198689 9606 + X:135985468-136047264 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonLiverOvaryENST00000370695
Transcript ID Brain Colon Liver Ovary
ENST00000370695 9.782±0.00 1.925±0.00 1.097±0.00 0.635±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000GK CIL_0000GK_0002 CGP X:135962070-136047264
CIL_0000PQ CIL_0000PQ_0003 CGP X:135985439-136211359

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005739 IEA mitochondrion
GO:0005768 IEA endosome
GO:0005769 IEA early endosome
GO:0005770 IEA late endosome
GO:0005789 IDA endoplasmic reticulum membrane
GO:0005886 IDA plasma membrane
GO:0006810 TAS transport
GO:0006811 TAS ion transport
GO:0006812 IEA cation transport
GO:0006814 IEA sodium ion transport
GO:0006885 IEA regulation of pH
GO:0015299 IEA solute:proton antiporter activity
GO:0015385 IEA sodium:proton antiporter activity
GO:0015992 IEA proton transport
GO:0016021 IEA integral component of membrane
GO:0030425 IEA dendrite
GO:0031410 IEA cytoplasmic vesicle
GO:0031547 IEA brain-derived neurotrophic factor receptor signaling pathway
GO:0031901 IDA early endosome membrane
GO:0035725 IEA sodium ion transmembrane transport
GO:0043679 IEA axon terminus
GO:0044308 IEA axonal spine
GO:0045202 IEA synapse
GO:0048675 IDA axon extension
GO:0048812 IDA neuron projection morphogenesis
GO:0050808 IEA synapse organization
GO:0051386 IEA regulation of neurotrophin TRK receptor signaling pathway
GO:0055037 IEA recycling endosome
GO:0055038 IDA recycling endosome membrane
GO:0055085 TAS:IEA transmembrane transport
GO:0060996 IEA dendritic spine development
GO:0097484 IDA dendrite extension
GO:1902600 IEA hydrogen ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077741 Slc9a6-001 protein_coding Mus_musculus 0 4892
ENSMUST00000114784 Slc9a6-002 protein_coding Mus_musculus 0 4087
ENSMUST00000144068 Slc9a6-003 protein_coding Mus_musculus 0 1236

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