C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 9 (sodium/hydrogen exchanger), member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000077741 Slc9a6-001 ENSMUSG00000060681 10090 + X:56609854-56664230 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000077741
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000077741 1.278±0.01 1.996±0.00 1.653±0.53 6.292±0.14 1.894±0.00 1.264±0.52 0.545±0.00 1.496±0.00 0.877±0.13 2.716±0.34 1.379±0.09 4.056±2.82 5.770±0.94 0.700±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000GK CIL_0000GK_0003 CGP X:56585512-56664230
CIL_0000PQ CIL_0000PQ_0004 CGP X:56609757-56793346

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005739 IDA mitochondrion
GO:0005768 IDA endosome
GO:0005769 IDA early endosome
GO:0005770 IDA late endosome
GO:0005789 IEA endoplasmic reticulum membrane
GO:0005886 IDA plasma membrane
GO:0006885 IEA regulation of pH
GO:0015385 IEA sodium:proton antiporter activity
GO:0015992 IMP proton transport
GO:0016021 IEA integral component of membrane
GO:0030425 IDA dendrite
GO:0031410 IDA cytoplasmic vesicle
GO:0031547 IMP brain-derived neurotrophic factor receptor signaling pathway
GO:0031901 IEA early endosome membrane
GO:0035725 IEA sodium ion transmembrane transport
GO:0043679 IDA axon terminus
GO:0044308 IDA axonal spine
GO:0045202 IDA synapse
GO:0048675 ISO axon extension
GO:0048812 ISO neuron projection morphogenesis
GO:0050808 IMP synapse organization
GO:0051386 IMP regulation of neurotrophin TRK receptor signaling pathway
GO:0055037 IDA recycling endosome
GO:0055038 IEA recycling endosome membrane
GO:0060996 IMP dendritic spine development
GO:0097484 ISO dendrite extension
GO:1902600 IEA hydrogen ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370695 SLC9A6-002 protein_coding Homo_sapiens 0 4892
ENST00000370698 SLC9A6-001 protein_coding Homo_sapiens 0 4215
ENST00000370701 SLC9A6-003 protein_coding Homo_sapiens 0 4678

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