C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB3B, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371655 RAB3B-001 ENSG00000169213 9606 - 1:51907956-51990764 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000371655
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000371655 0.029±0.00 0.094±0.00 0.227±0.00 3.011±0.18 0.133±0.08 0.660±0.26 0.017±0.00 0.183±0.12 0.147±0.07 0.081±0.03 0.030±0.03 0.572±0.67 1.278±0.64 0.154±0.04

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IDA:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IDA:IEA cytoplasm
GO:0005829 IEA cytosol
GO:0005886 IEA plasma membrane
GO:0006184 IDA:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008021 IEA synaptic vesicle
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0017157 IEA regulation of exocytosis
GO:0018125 IEA peptidyl-cysteine methylation
GO:0019003 IDA GDP binding
GO:0019882 IMP antigen processing and presentation
GO:0030141 IEA secretory granule
GO:0031489 IPI myosin V binding
GO:0031982 IDA vesicle
GO:0048471 IDA perinuclear region of cytoplasm
GO:0051586 IDA positive regulation of dopamine uptake involved in synaptic transmission
GO:0070062 IDA extracellular vesicular exosome
GO:0097494 IDA regulation of vesicle size

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106650 Rab3b-001 protein_coding Mus_musculus 0 196
ENSMUST00000105321 Nfic-001 protein_coding Mus_musculus 0.0000004 64
ENSMUST00000091246 Flcn-005 protein_coding Mus_musculus 0.0000004 64
ENSMUST00000148151 Flcn-003 retained_intron Mus_musculus 0.0000004 64
ENSMUST00000102697 Flcn-004 protein_coding Mus_musculus 0.0000004 64
ENSMUST00000116286 Stk40-201 protein_coding Mus_musculus 0.0002 55
ENSMUST00000127092 Stk40-002 processed_transcript Mus_musculus 0.0002 55

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