C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: folliculin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000148151 Flcn-003 ENSMUSG00000032633 10090 - 11:59791457-59809924 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastLiverLungMuscleOvaryTestisENSMUST00000148151
Transcript ID Adrenal Bladder Brain Breast Liver Lung Muscle Ovary Testis
ENSMUST00000148151 7.115±1.61 8.768±0.00 3.792±2.14 12.299±0.00 2.518±1.05 8.323±0.00 3.408±0.55 4.518±0.71 2.123±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009A0 CIL_0009A0_0002 VISTA 11:59693037-60296757
CIL_0000NR CIL_0000NR_0002 CGP 11:59783897-59810016
CIL_00040N CIL_00040N_0002 CGP 11:59791408-59839838

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262878 SAMHD1-001 protein_coding Homo_sapiens 0.0000001 64
ENST00000264990 ACAD11-001 protein_coding Homo_sapiens 0.000006 58
ENST00000285071 FLCN-001 protein_coding Homo_sapiens 0 1380
ENST00000298912 CLMN-001 protein_coding Homo_sapiens 0.00006 57
ENST00000317233 AFF3-201 protein_coding Homo_sapiens 0.00004 57
ENST00000333991 APAF1-201 protein_coding Homo_sapiens 0.000006 58
ENST00000355086 SRGAP1-001 protein_coding Homo_sapiens 0.000009 60
ENST00000357310 APAF1-202 protein_coding Homo_sapiens 0.00001 58
ENST00000359972 APAF1-001 protein_coding Homo_sapiens 0.00001 58
ENST00000366398 RP5-886K2.1-001 processed_pseudogene Homo_sapiens 0.0000001 62
ENST00000371655 RAB3B-001 protein_coding Homo_sapiens 0.0000004 64
ENST00000378823 RAD50-001 protein_coding Homo_sapiens 0.0000003 64
ENST00000389168 FLCN-004 retained_intron Homo_sapiens 0 481
ENST00000389169 FLCN-002 protein_coding Homo_sapiens 0 1099
ENST00000389171 FLCN-003 retained_intron Homo_sapiens 0 481
ENST00000397802 POLR3D-001 protein_coding Homo_sapiens 0.000008 58
ENST00000409236 AFF3-001 protein_coding Homo_sapiens 0.00005 57
ENST00000414513 CD99P1-002 retained_intron Homo_sapiens 0.0002 53
ENST00000417064 FLCN-006 protein_coding Homo_sapiens 0 665
ENST00000427497 RP11-45M22.4-001 nonsense_mediated_decay Homo_sapiens 0 427
ENST00000466317 FLCN-005 retained_intron Homo_sapiens 0 311
ENST00000469222 SAG-006 retained_intron Homo_sapiens 0.0003 53
ENST00000471702 NPHP3-ACAD11-001 nonsense_mediated_decay Homo_sapiens 0.00001 58
ENST00000478816 KCTD18-003 retained_intron Homo_sapiens 0.0002 53
ENST00000480316 FLCN-009 retained_intron Homo_sapiens 0 580
ENST00000485198 ACAD11-002 nonsense_mediated_decay Homo_sapiens 0.000004 58
ENST00000486943 CACNA1F-005 protein_coding Homo_sapiens 0.00000002 64
ENST00000493286 PPARA-005 retained_intron Homo_sapiens 0.000002 58
ENST00000493357 MIER1-005 processed_transcript Homo_sapiens 0.0000006 58
ENST00000496418 ACAD11-006 retained_intron Homo_sapiens 0.000005 58
ENST00000510852 USP53-004 retained_intron Homo_sapiens 0.00000007 64
ENST00000527788 QSER1-002 protein_coding Homo_sapiens 0.0000005 62
ENST00000550527 APAF1-004 protein_coding Homo_sapiens 0.000009 58
ENST00000577307 CCT6B-004 retained_intron Homo_sapiens 0.0000004 62
ENST00000588555 SCAMP4-002 retained_intron Homo_sapiens 0.0000002 62
ENST00000595101 USE1-002 protein_coding Homo_sapiens 0.0000007 60
ENST00000599380 SLC27A1-004 nonsense_mediated_decay Homo_sapiens 0.00005 55
ENST00000615596 GTF2I-009 retained_intron Homo_sapiens 0.000000006 66

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