C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: surfeit 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371964 SURF2-001 ENSG00000148291 9606 + 9:133356552-133361169 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000371964
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000371964 8.552±0.00 19.263±0.00 0.310±0.00 8.500±4.24 7.064±6.44 7.390±7.20 3.023±2.09 10.527±9.73 4.836±4.24 8.258±0.00 8.361±6.99 13.143±8.41 10.244±2.76 81.482±3.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006DK CIL_0006DK_0001 CGP 9:133348214-133356676
CIL_0006DJ CIL_0006DJ_0001 CGP 9:133351755-133361169
CIL_0006DE CIL_0006DE_0001 CGP 9:133356552-133376166

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005886 IDA plasma membrane
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000015017 Surf2-001 protein_coding Mus_musculus 0 346
ENSMUST00000125408 Surf2-005 processed_transcript Mus_musculus 0 337
ENSMUST00000126947 Surf2-002 processed_transcript Mus_musculus 0 241
ENSMUST00000157066 Surf2-003 processed_transcript Mus_musculus 0 231
ENSMUST00000143098 Surf2-004 processed_transcript Mus_musculus 2e-28 130
ENSMUST00000135506 Surf2-006 retained_intron Mus_musculus 9e-28 128

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