C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 220
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030439 Rnf220-001 ENSMUSG00000028677 10090 - 4:117271463-117497052 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainTestisENSMUST00000030439
Transcript ID Adipose Brain Testis
ENSMUST00000030439 2.957±0.05 12.607±7.05 3.377±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093U CIL_00093U_0002 VISTA 4:117090982-117692314
CIL_0001PQ CIL_0001PQ_0002 CGP 4:117251951-117497052

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0016567 IDA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0051865 IDA protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000335497 RNF220-014 protein_coding Homo_sapiens 0 846
ENST00000355387 RNF220-001 protein_coding Homo_sapiens 0 3125
ENST00000361799 RNF220-002 protein_coding Homo_sapiens 0 2976
ENST00000372242 TMEM53-007 protein_coding Homo_sapiens 4e-19 100
ENST00000372243 TMEM53-003 protein_coding Homo_sapiens 4e-19 100
ENST00000372244 TMEM53-005 protein_coding Homo_sapiens 1e-18 99
ENST00000372247 RNF220-201 protein_coding Homo_sapiens 0 2976
ENST00000440132 RNF220-013 protein_coding Homo_sapiens 0 1075
ENST00000443020 RNF220-202 protein_coding Homo_sapiens 0 2959
ENST00000453863 RNF220-010 protein_coding Homo_sapiens 0 230
ENST00000471494 RNF220-012 processed_transcript Homo_sapiens 0 473
ENST00000474064 RNF220-003 processed_transcript Homo_sapiens 0 1081
ENST00000474394 RNF220-017 processed_transcript Homo_sapiens 0 955
ENST00000474956 RNF220-005 processed_transcript Homo_sapiens 0 403
ENST00000475378 RNF220-015 processed_transcript Homo_sapiens 0 1225
ENST00000480686 RNF220-004 processed_transcript Homo_sapiens 0 730
ENST00000484745 RNF220-006 processed_transcript Homo_sapiens 0 1254
ENST00000487332 RNF220-007 processed_transcript Homo_sapiens 7.00005e-41 171
ENST00000488865 RNF220-016 nonsense_mediated_decay Homo_sapiens 7e-34 148
ENST00000496262 RNF220-008 processed_transcript Homo_sapiens 0 235
ENST00000497469 RNF220-011 processed_transcript Homo_sapiens 0 473

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