C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 220
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000133971 Rnf220-004 ENSMUSG00000028677 10090 - 4:117285379-117289111 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENSMUST00000133971
Transcript ID Ovary Placenta Testis
ENSMUST00000133971 103.629±0.00 108.015±1.87 185.004±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093U CIL_00093U_0002 VISTA 4:117090982-117692314
CIL_0001PQ CIL_0001PQ_0002 CGP 4:117251951-117497052

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000335497 RNF220-014 protein_coding Homo_sapiens 0 473
ENST00000355387 RNF220-001 protein_coding Homo_sapiens 2e-34 152
ENST00000361799 RNF220-002 protein_coding Homo_sapiens 2e-34 152
ENST00000372242 TMEM53-007 protein_coding Homo_sapiens 0 206
ENST00000372243 TMEM53-003 protein_coding Homo_sapiens 0 206
ENST00000372244 TMEM53-005 protein_coding Homo_sapiens 0 206
ENST00000372247 RNF220-201 protein_coding Homo_sapiens 2e-34 152
ENST00000440132 RNF220-013 protein_coding Homo_sapiens 1e-32 145
ENST00000443020 RNF220-202 protein_coding Homo_sapiens 2e-34 152
ENST00000453863 RNF220-010 protein_coding Homo_sapiens 0 462
ENST00000471494 RNF220-012 processed_transcript Homo_sapiens 0 477
ENST00000474064 RNF220-003 processed_transcript Homo_sapiens 2e-33 148
ENST00000475378 RNF220-015 processed_transcript Homo_sapiens 5.60519e-45 185
ENST00000484745 RNF220-006 processed_transcript Homo_sapiens 0.00000000000004 84
ENST00000488865 RNF220-016 nonsense_mediated_decay Homo_sapiens 0 477
ENST00000497469 RNF220-011 processed_transcript Homo_sapiens 0 514

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