C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired related homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372469 PRRX2-001 ENSG00000167157 9606 + 9:129665641-129722674 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372469
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372469 4.378±0.00 4.235±0.00 0.146±0.10 2.227±1.63 3.567±0.00 0.474±0.00 0.983±0.00 0.327±0.29 7.313±6.76 0.792±0.00 1.760±1.00 4.073±2.62 5.187±0.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005UD CIL_0005UD_0001 CGP 9:129634604-129722674
CIL_0005UC CIL_0005UC_0001 CGP 9:129665641-129753047

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002053 IEA positive regulation of mesenchymal cell proliferation
GO:0003677 IEA DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0030326 IEA embryonic limb morphogenesis
GO:0042472 IEA inner ear morphogenesis
GO:0042474 IEA middle ear morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045880 IEA positive regulation of smoothened signaling pathway
GO:0048701 IEA embryonic cranial skeleton morphogenesis
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0048844 IEA artery morphogenesis
GO:0051216 IEA cartilage development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041659 Prrx2-002 protein_coding Mus_musculus 0 712
ENSMUST00000113592 Prrx2-001 protein_coding Mus_musculus 0 488
ENSMUST00000150299 Prrx2-003 retained_intron Mus_musculus 0 372
ENSMUST00000137924 Prrx2-004 retained_intron Mus_musculus 0 329

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