C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TBC1 domain family, member 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372648 TBC1D13-002 ENSG00000107021 9606 + 9:128787204-128810432 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372648
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372648 6.563±0.00 6.162±0.00 2.807±0.00 5.856±4.53 4.486±4.07 3.547±0.00 5.929±0.00 6.607±0.00 0.709±0.08 0.988±0.68 2.694±1.73 7.136±5.08 4.684±1.49 4.687±1.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006W4 CIL_0006W4_0001 CGP 9:128729786-128810432
CIL_0005L7 CIL_0005L7_0001 CGP 9:128787204-128822677

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005097 IEA Rab GTPase activator activity
GO:0005515 IEA protein binding
GO:0032313 IEA regulation of Rab GTPase activity
GO:0032851 IEA positive regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000044556 Tbc1d13-001 protein_coding Mus_musculus 0 1653
ENSMUST00000129789 Tbc1d13-007 processed_transcript Mus_musculus 0 486
ENSMUST00000134013 Tbc1d13-006 processed_transcript Mus_musculus 0 459
ENSMUST00000125142 Tbc1d13-005 processed_transcript Mus_musculus 0 268
ENSMUST00000150879 Tbc1d13-004 retained_intron Mus_musculus 0 211
ENSMUST00000136183 Tbc1d13-002 nonsense_mediated_decay Mus_musculus 0 211
ENSMUST00000131261 Tbc1d13-003 nonsense_mediated_decay Mus_musculus 3.99931e-42 178

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