C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: carbohydrate (chondroitin 6) sulfotransferase 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373115 CHST3-001 ENSG00000122863 9606 + 10:71964365-72013564 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373115
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373115 8.080±0.00 4.506±0.00 1.817±0.00 5.021±4.11 8.625±0.00 4.530±3.67 4.462±3.03 3.601±3.09 2.293±1.49 3.699±1.98 3.561±0.08 10.524±6.80 7.902±2.04 13.344±1.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VS CIL_0007VS_0001 VISTA 10:71953326-72556599

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS:IEA Golgi membrane
GO:0005975 TAS:IEA carbohydrate metabolic process
GO:0006790 IDA sulfur compound metabolic process
GO:0008146 TAS:IEA sulfotransferase activity
GO:0008459 IDA chondroitin 6-sulfotransferase activity
GO:0016021 IEA integral component of membrane
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0030206 IDA chondroitin sulfate biosynthetic process
GO:0043029 IEA T cell homeostasis
GO:0044281 TAS small molecule metabolic process
GO:0050698 IEA proteoglycan sulfotransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000135158 Chst3-201 protein_coding Mus_musculus 0 1471
ENSMUST00000068690 Chst3-002 protein_coding Mus_musculus 0 1471
ENSMUST00000167915 Chst3-001 protein_coding Mus_musculus 0 1467

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