C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromodomain helicase DNA binding protein 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373222 CHD6-006 ENSG00000124177 9606 - 20:41496809-41618375 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004E8 CIL_0004E8_0001 CGP 20:41359966-41618494
CIL_0004E5 CIL_0004E5_0001 CGP 20:41402101-43189970

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001221 IPI transcription cofactor binding
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005524 IEA ATP binding
GO:0005654 IDA nucleoplasm
GO:0005665 IDA DNA-directed RNA polymerase II, core complex
GO:0006200 IEA ATP catabolic process
GO:0006351 IEA transcription, DNA-templated
GO:0008026 IEA ATP-dependent helicase activity
GO:0008094 IDA DNA-dependent ATPase activity
GO:0016568 IEA chromatin modification
GO:0036091 IMP positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000138078 Chd6-005 retained_intron Mus_musculus 0 1153
ENSMUST00000039782 Chd6-003 protein_coding Mus_musculus 0 1153
ENSMUST00000134178 Chd6-001 protein_coding Mus_musculus 0 1140
ENSMUST00000125179 Chd6-002 retained_intron Mus_musculus 0 963
ENSMUST00000130265 Chd6-004 protein_coding Mus_musculus 0 821
ENSMUST00000155066 Chd6-008 processed_transcript Mus_musculus 0 206

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