C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: caudal type homeobox 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373514 CDX4-001 ENSG00000131264 9606 + X:73447254-73455245 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENST00000373514
Transcript ID Testis
ENST00000373514 0.008±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006RR CIL_0006RR_0001 CGP X:73212299-73455245
CIL_0006S4 CIL_0006S4_0001 CGP X:73447254-73687102

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001568 IEA blood vessel development
GO:0001890 IEA placenta development
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0009952 IEA anterior/posterior pattern specification
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0060711 IEA labyrinthine layer development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033689 Cdx4-001 protein_coding Mus_musculus 0 760

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