C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 28B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373602 CCDC28B-002 ENSG00000160050 9606 + 1:32200386-32205387 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLungMuscleOvaryPlacentaTestisENST00000373602
Transcript ID Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000373602 2.369±0.00 0.340±0.00 0.659±0.00 1.660±0.40 1.919±0.00 2.429±1.20 5.081±1.11 3.530±1.47 16.039±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AA CIL_0008AA_0001 VISTA 1:31744429-32345312
CIL_0003PW CIL_0003PW_0002 CGP 1:32200386-32208687

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005813 IDA centrosome
GO:0042384 IMP cilium assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030586 Ccdc28b-001 protein_coding Mus_musculus 0 808
ENSMUST00000106035 Ccdc28b-002 protein_coding Mus_musculus 0 713
ENSMUST00000151838 Ccdc28b-010 nonsense_mediated_decay Mus_musculus 0 662
ENSMUST00000124630 Ccdc28b-003 processed_transcript Mus_musculus 0 536
ENSMUST00000123943 Ccdc28b-006 processed_transcript Mus_musculus 0 481
ENSMUST00000141361 Ccdc28b-009 retained_intron Mus_musculus 0 342

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