C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: karyopherin alpha 6 (importin alpha 7)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373625 KPNA6-001 ENSG00000025800 9606 + 1:32108038-32176568 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373625
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373625 13.411±0.00 4.426±0.00 3.354±0.00 5.522±4.31 6.623±3.63 5.866±1.16 8.248±4.65 2.030±1.57 4.319±0.73 3.849±0.36 10.813±3.63 7.757±2.32 9.216±2.58 13.086±2.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AA CIL_0008AA_0001 VISTA 1:31744429-32345312

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006606 IEA protein import into nucleus
GO:0006607 TAS NLS-bearing protein import into nucleus
GO:0008565 IEA protein transporter activity
GO:0016020 IDA membrane
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0060135 IEA maternal process involved in female pregnancy

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102590 Kpna6-001 protein_coding Mus_musculus 0 3579
ENSMUST00000003828 Kpna6-003 protein_coding Mus_musculus 0 2787
ENSMUST00000146215 Kpna6-006 retained_intron Mus_musculus 0 538
ENSDART00000142080 kpna1-001 protein_coding Danio_rerio 0 501
ENSMUST00000138916 Kpna6-005 retained_intron Mus_musculus 0 466
ENSMUST00000126010 Kpna6-002 protein_coding Mus_musculus 0 372
ENSMUST00000146361 Kpna6-004 retained_intron Mus_musculus 0 265
ENSMUST00000148884 Blzf1-004 retained_intron Mus_musculus 0.000000005 69

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