C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphatase and actin regulator 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373839 PHACTR4-001 ENSG00000204138 9606 + 1:28369603-28500369 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373839
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373839 3.108±0.00 6.765±0.00 0.448±0.00 1.398±0.73 2.350±0.82 1.613±0.48 0.583±0.46 2.588±1.69 3.743±0.00 1.695±1.18 2.791±0.00 6.744±4.67 4.714±3.48 6.337±1.92

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001755 ISS neural crest cell migration
GO:0001843 ISS neural tube closure
GO:0003779 ISS actin binding
GO:0005737 IEA cytoplasm
GO:0007266 ISS Rho protein signal transduction
GO:0008157 ISS protein phosphatase 1 binding
GO:0030027 ISS lamellipodium
GO:0030036 ISS actin cytoskeleton organization
GO:0043085 ISS positive regulation of catalytic activity
GO:0048484 ISS enteric nervous system development
GO:0051726 ISS regulation of cell cycle
GO:0061386 ISS closure of optic fissure
GO:0071862 ISS protein phosphatase type 1 activator activity
GO:2001045 ISS negative regulation of integrin-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102568 Phactr4-001 protein_coding Mus_musculus 0 1908
ENSMUST00000084249 Phactr4-002 protein_coding Mus_musculus 0 1807
ENSMUST00000084170 Phactr4-201 protein_coding Mus_musculus 0 1482
ENSMUST00000127516 Phactr4-005 processed_transcript Mus_musculus 0 595
ENSMUST00000152271 Phactr4-003 protein_coding Mus_musculus 0 390
ENSMUST00000157025 Ctr9-003 retained_intron Mus_musculus 0.0001 55
ENSMUST00000152019 Ctr9-002 retained_intron Mus_musculus 0.0001 55

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