C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: obscurin-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373873 OBSL1-002 ENSG00000124006 9606 - 2:219561722-219571289 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000373873
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000373873 3.743±0.00 1.974±0.00 4.097±0.00 4.395±1.67 0.578±0.00 5.986±2.18 10.333±6.73 3.635±1.28 2.506±1.10 4.943±1.88 29.004±20.65 18.730±4.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_00082R CIL_00082R_0001 VISTA 2:219549147-220152579

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IMP microtubule cytoskeleton organization
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005813 IDA centrosome
GO:0007010 NAS cytoskeleton organization
GO:0007030 IMP Golgi organization
GO:0007088 IMP regulation of mitosis
GO:0008093 NAS cytoskeletal adaptor activity
GO:0014704 TAS intercalated disc
GO:0030018 TAS Z disc
GO:0031430 TAS M band
GO:0034067 IMP protein localization to Golgi apparatus
GO:0048471 TAS perinuclear region of cytoplasm
GO:0050775 IMP positive regulation of dendrite morphogenesis
GO:0055003 NAS cardiac myofibril assembly
GO:1990393 IDA 3M complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113565 Obsl1-010 protein_coding Mus_musculus 0 3650
ENSMUST00000113567 Obsl1-001 protein_coding Mus_musculus 0 3374
ENSMUST00000155084 Obsl1-012 protein_coding Mus_musculus 0 2736
ENSMUST00000145306 Obsl1-003 retained_intron Mus_musculus 0 2473
ENSMUST00000127507 Obsl1-005 retained_intron Mus_musculus 0 1866
ENSMUST00000129403 Obsl1-004 retained_intron Mus_musculus 0 1786

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