C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tumor necrosis factor (ligand) superfamily, member 15
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374045 TNFSF15-001 ENSG00000181634 9606 - 9:114784635-114806126 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374045
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374045 0.041±0.00 0.244±0.00 0.355±0.00 0.037±0.01 0.523±0.20 0.344±0.06 0.047±0.01 0.596±0.59 0.230±0.22 0.694±0.14 0.026±0.00 0.427±0.29 0.880±0.05 0.062±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OV CIL_0004OV_0001 CGP 9:114784635-114930595

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005102 TAS receptor binding
GO:0005123 IEA death receptor binding
GO:0005125 IEA cytokine activity
GO:0005164 IEA tumor necrosis factor receptor binding
GO:0005515 IEA protein binding
GO:0005615 IEA extracellular space
GO:0005886 IDA plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006919 IDA activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0006955 IEA immune response
GO:0007165 NAS signal transduction
GO:0007250 IDA activation of NF-kappaB-inducing kinase activity
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0042107 IDA cytokine metabolic process
GO:0050715 IEA positive regulation of cytokine secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000062246 Tnfsf15-001 protein_coding Mus_musculus 0 477
ENSMUST00000108492 Hif3a-002 protein_coding Mus_musculus 0.000009 58
ENSMUST00000146436 Accs-004 retained_intron Mus_musculus 0.00003 57

Loading