C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre-mRNA processing factor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374199 PRPF4-001 ENSG00000136875 9606 + 9:113275343-113292905 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374199
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374199 4.436±0.00 3.449±0.00 1.378±0.00 3.202±0.71 3.753±0.27 3.504±2.46 1.754±0.47 3.314±1.91 2.411±0.57 4.989±0.00 2.589±1.17 5.654±2.44 5.727±2.38 4.852±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CC CIL_0002CC_0002 CGP 9:113221562-113275589
CIL_0002CB CIL_0002CB_0002 CGP 9:113255835-113292905
CIL_0004CQ CIL_0004CQ_0001 CGP 9:113275343-113303376

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000375 NAS RNA splicing, via transesterification reactions
GO:0000398 IC mRNA splicing, via spliceosome
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 NAS spliceosomal complex
GO:0006396 TAS RNA processing
GO:0008380 TAS:IEA RNA splicing
GO:0010467 TAS gene expression
GO:0015030 IDA Cajal body
GO:0071001 IDA U4/U6 snRNP

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000084524 Prpf4-001 protein_coding Mus_musculus 0 2169
ENSMUST00000148774 Prpf4-002 processed_transcript Mus_musculus 0 444

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