C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374647 IKBKAP-001 ENSG00000070061 9606 - 9:108867517-108934116 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374647
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374647 1.022±0.00 1.580±0.00 0.673±0.00 1.964±0.09 0.883±0.19 0.988±0.54 1.913±0.22 1.220±0.06 1.066±0.00 0.708±0.00 2.279±1.08 2.214±0.93 4.292±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001GJ CIL_0001GJ_0001 CGP 9:108862266-108934116
CIL_0001GI CIL_0001GI_0001 CGP 9:108867517-108950744

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0004871 TAS signal transducer activity
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006325 TAS chromatin organization
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006368 IDA transcription elongation from RNA polymerase II promoter
GO:0006461 TAS protein complex assembly
GO:0006468 TAS protein phosphorylation
GO:0006955 TAS immune response
GO:0007165 TAS signal transduction
GO:0008023 IDA transcription elongation factor complex
GO:0008607 IDA phosphorylase kinase regulator activity
GO:0016591 IDA DNA-directed RNA polymerase II, holoenzyme
GO:0030335 ISS positive regulation of cell migration
GO:0033588 IDA Elongator holoenzyme complex
GO:0045859 IDA regulation of protein kinase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030140 Ikbkap-001 protein_coding Mus_musculus 0 3711
ENSMUST00000140595 Ikbkap-004 retained_intron Mus_musculus 0 628
ENSMUST00000126441 Ikbkap-005 retained_intron Mus_musculus 0 344

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