C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: par-3 family cell polarity regulator
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374789 PARD3-002 ENSG00000148498 9606 - 10:34109561-34815321 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyOvaryPlacentaTestisENST00000374789
Transcript ID Adipose Brain Breast Colon Kidney Ovary Placenta Testis
ENST00000374789 0.946±0.00 0.515±0.00 1.261±0.00 3.294±0.00 1.620±0.00 3.210±0.12 1.820±0.28 3.504±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IEA microtubule cytoskeleton organization
GO:0003383 IEA apical constriction
GO:0005080 IEA protein kinase C binding
GO:0005515 IPI:IEA protein binding
GO:0005546 ISS phosphatidylinositol-4,5-bisphosphate binding
GO:0005547 ISS phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005737 IEA cytoplasm
GO:0005819 IEA spindle
GO:0005829 TAS cytosol
GO:0005886 TAS plasma membrane
GO:0005911 ISS cell-cell junction
GO:0005912 IEA adherens junction
GO:0005913 IEA cell-cell adherens junction
GO:0005923 ISS tight junction
GO:0005938 IEA cell cortex
GO:0006461 TAS protein complex assembly
GO:0006612 ISS protein targeting to membrane
GO:0007049 IEA cell cycle
GO:0007163 TAS establishment or maintenance of cell polarity
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0007205 TAS protein kinase C-activating G-protein coupled receptor signaling pathway
GO:0007409 TAS axonogenesis
GO:0008356 TAS asymmetric cell division
GO:0010801 ISS negative regulation of peptidyl-threonine phosphorylation
GO:0019903 IEA protein phosphatase binding
GO:0022011 ISS myelination in peripheral nervous system
GO:0030054 IDA cell junction
GO:0031643 ISS positive regulation of myelination
GO:0032266 ISS phosphatidylinositol-3-phosphate binding
GO:0032970 IEA regulation of actin filament-based process
GO:0033269 ISS internode region of axon
GO:0034329 TAS cell junction assembly
GO:0043025 IEA neuronal cell body
GO:0043234 IEA protein complex
GO:0044295 IEA axonal growth cone
GO:0044319 IEA wound healing, spreading of cells
GO:0045177 IEA apical part of cell
GO:0045216 TAS cell-cell junction organization
GO:0051642 IEA centrosome localization
GO:0060341 IEA regulation of cellular localization
GO:0070830 ISS tight junction assembly
GO:0090162 ISS establishment of epithelial cell polarity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000160272 Pard3-002 protein_coding Mus_musculus 0 3993
ENSMUST00000162309 Pard3-001 protein_coding Mus_musculus 0 3973
ENSMUST00000162602 Pard3-015 protein_coding Mus_musculus 0 3219
ENSMUST00000079777 Pard3-201 protein_coding Mus_musculus 0 3184
ENSMUST00000162536 Pard3-018 protein_coding Mus_musculus 0 3083
ENSMUST00000160593 Pard3-005 retained_intron Mus_musculus 0 2652
ENSMUST00000026921 Pard3-006 protein_coding Mus_musculus 0 2649
ENSMUST00000162456 Pard3-007 protein_coding Mus_musculus 0 2625
ENSMUST00000161355 Pard3-019 protein_coding Mus_musculus 0 2483
ENSMUST00000162665 Pard3-008 protein_coding Mus_musculus 0 2483
ENSMUST00000162907 Pard3-003 protein_coding Mus_musculus 0 2278
ENSMUST00000160581 Pard3-017 protein_coding Mus_musculus 0 1746
ENSMUST00000162531 Pard3-016 protein_coding Mus_musculus 0 1746
ENSMUST00000108752 Pard3-202 protein_coding Mus_musculus 0 1720
ENSMUST00000160717 Pard3-004 protein_coding Mus_musculus 0 1720
ENSMUST00000160766 Pard3-014 protein_coding Mus_musculus 0 1323
ENSMUST00000161277 Pard3-013 protein_coding Mus_musculus 0 1319
ENSMUST00000159537 Pard3-012 protein_coding Mus_musculus 0 1319
ENSMUST00000161348 Pard3-009 protein_coding Mus_musculus 0 870
ENSMUST00000163002 Pard3-024 retained_intron Mus_musculus 0 767
ENSMUST00000159818 Pard3-021 nonsense_mediated_decay Mus_musculus 0 331
ENSMUST00000159511 Pard3-025 protein_coding Mus_musculus 0 261
ENSMUST00000159141 Pard3-020 nonsense_mediated_decay Mus_musculus 0 228
ENSMUST00000162035 Pard3-010 retained_intron Mus_musculus 0 213

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