C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: par-3 family cell polarity regulator
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162309 Pard3-001 ENSMUSG00000025812 10090 + 8:127063893-127611970 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000162309
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000162309 2.488±1.20 4.175±0.57 2.364±0.31 1.955±0.58 3.210±0.41 2.735±0.56 0.620±0.00 1.916±0.32 0.667±0.03 6.378±1.42 1.325±0.38 5.615±1.63 5.514±2.74 0.299±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000CM CIL_0000CM_0002 CGP 8:127063893-128505462

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IMP microtubule cytoskeleton organization
GO:0003383 IGI apical constriction
GO:0005080 IPI protein kinase C binding
GO:0005515 IPI protein binding
GO:0005546 IEA phosphatidylinositol-4,5-bisphosphate binding
GO:0005547 IEA phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005737 IDA cytoplasm
GO:0005819 IDA spindle
GO:0005911 IDA cell-cell junction
GO:0005912 IDA adherens junction
GO:0005913 IDA cell-cell adherens junction
GO:0005938 IDA cell cortex
GO:0006612 IEA protein targeting to membrane
GO:0016337 IC single organismal cell-cell adhesion
GO:0019903 IEA protein phosphatase binding
GO:0030054 IDA cell junction
GO:0032266 IEA phosphatidylinositol-3-phosphate binding
GO:0032970 IGI regulation of actin filament-based process
GO:0043025 IEA neuronal cell body
GO:0043234 IDA protein complex
GO:0044295 IEA axonal growth cone
GO:0044319 IMP wound healing, spreading of cells
GO:0045177 IDA apical part of cell
GO:0051642 IMP centrosome localization
GO:0060341 IEA regulation of cellular localization
GO:0070830 IEA tight junction assembly
GO:0090162 IEA establishment of epithelial cell polarity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340077 PARD3-201 protein_coding Homo_sapiens 0 3210
ENST00000346874 PARD3-004 protein_coding Homo_sapiens 0 3166
ENST00000350537 PARD3-006 protein_coding Homo_sapiens 0 1770
ENST00000374773 PARD3-009 protein_coding Homo_sapiens 0 2547
ENST00000374776 PARD3-001 protein_coding Homo_sapiens 0 1770
ENST00000374788 PARD3-003 protein_coding Homo_sapiens 0 4015
ENST00000374789 PARD3-002 protein_coding Homo_sapiens 0 3973
ENST00000374790 PARD3-010 protein_coding Homo_sapiens 0 2198
ENST00000374794 PARD3-005 protein_coding Homo_sapiens 0 893
ENST00000466092 PARD3-008 processed_transcript Homo_sapiens 0 769
ENST00000544292 PARD3-202 protein_coding Homo_sapiens 0 1406
ENST00000545260 PARD3-203 protein_coding Homo_sapiens 0 1321
ENST00000545693 PARD3-204 protein_coding Homo_sapiens 0 2198

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