C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, gamma complex associated protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000375669 TUBGCP3-002 ENSG00000126216 9606 - 13:112498807-112588125 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartLungOvaryPlacentaTestisENST00000375669
Transcript ID Adipose Brain Colon Heart Lung Ovary Placenta Testis
ENST00000375669 1.781±0.00 1.169±0.00 1.550±0.00 0.692±0.15 0.781±0.00 5.010±0.51 1.110±0.23 3.843±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00014D CIL_00014D_0001 CGP 13:112376319-112588167

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000226 IEA microtubule cytoskeleton organization
GO:0000278 TAS mitotic cell cycle
GO:0000922 IEA spindle pole
GO:0005198 NAS structural molecule activity
GO:0005200 NAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005813 NAS centrosome
GO:0005814 IDA centriole
GO:0005815 IEA microtubule organizing center
GO:0005819 NAS spindle
GO:0005827 IDA polar microtubule
GO:0005829 TAS cytosol
GO:0007020 NAS microtubule nucleation
GO:0007338 NAS single fertilization
GO:0016020 IDA membrane
GO:0043015 IDA gamma-tubulin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000776 Tubgcp3-001 protein_coding Mus_musculus 0 2556
ENSMUST00000167547 Tubgcp3-002 retained_intron Mus_musculus 0 1827
ENSMUST00000164774 Tubgcp3-003 nonsense_mediated_decay Mus_musculus 0 1406
ENSMUST00000164971 Tubgcp3-004 retained_intron Mus_musculus 0 1404
ENSDART00000042064 tubgcp3-201 protein_coding Danio_rerio 0 854
ENSDART00000143228 tubgcp3-001 protein_coding Danio_rerio 0 854
ENSMUST00000168657 Tubgcp3-010 retained_intron Mus_musculus 0 734
ENSMUST00000164861 Tubgcp3-005 retained_intron Mus_musculus 0 379
ENSMUST00000165321 Tubgcp3-009 nonsense_mediated_decay Mus_musculus 0 363
ENSMUST00000164611 Tubgcp3-007 retained_intron Mus_musculus 0 268

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