C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein O-fucosyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000375749 POFUT1-004 ENSG00000101346 9606 + 20:32207880-32238667 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000375749
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000375749 4.050±0.00 7.642±0.00 2.062±0.00 1.317±0.00 4.185±0.39 2.687±1.22 4.296±2.89 7.352±1.63 4.724±3.80 2.772±0.88 5.406±0.00 11.104±3.03 8.403±3.81 3.565±1.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006RY CIL_0006RY_0002 CGP 20:32192503-32238667
CIL_0006RX CIL_0006RX_0002 CGP 20:32207880-32335011

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0001756 IEA somitogenesis
GO:0005783 IDA endoplasmic reticulum
GO:0006004 IEA fucose metabolic process
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0006493 IDA protein O-linked glycosylation
GO:0007219 NAS Notch signaling pathway
GO:0007399 IEA nervous system development
GO:0007507 IEA heart development
GO:0008417 IDA fucosyltransferase activity
GO:0009790 NAS embryo development
GO:0016020 IDA membrane
GO:0016266 TAS O-glycan processing
GO:0036066 IDA protein O-linked fucosylation
GO:0046922 TAS peptide-O-fucosyltransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049863 Pofut1-001 protein_coding Mus_musculus 0 1341
ENSMUST00000099192 Pofut1-002 protein_coding Mus_musculus 0 1120
ENSMUST00000109794 Pofut1-006 protein_coding Mus_musculus 0 1081
ENSMUST00000170297 Pofut1-007 nonsense_mediated_decay Mus_musculus 0 1061
ENSMUST00000152390 Pofut1-005 protein_coding Mus_musculus 0 684
ENSMUST00000099191 Pofut1-008 nonsense_mediated_decay Mus_musculus 0 682
ENSMUST00000123487 Pofut1-004 protein_coding Mus_musculus 0 664
ENSMUST00000123158 Pofut1-003 retained_intron Mus_musculus 0 527

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