C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PR domain containing 2, with ZNF domain
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105778 Prdm2-001 ENSMUSG00000057637 10090 - 4:143107391-143212705 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105778
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105778 3.676±2.24 3.264±1.50 3.753±1.42 3.445±0.84 3.599±1.24 3.052±1.39 1.175±0.00 3.572±1.29 1.454±0.39 6.889±1.23 2.083±0.72 8.304±3.36 2.914±1.15 6.979±4.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WT CIL_0003WT_0002 CGP 4:142102390-143212995

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000235372 PRDM2-001 protein_coding Homo_sapiens 0 4944
ENST00000311066 PRDM2-201 protein_coding Homo_sapiens 0 4710
ENST00000343137 PRDM2-004 protein_coding Homo_sapiens 0 3882
ENST00000376048 PRDM2-002 protein_coding Homo_sapiens 0 852
ENST00000407521 PRDM2-014 protein_coding Homo_sapiens 0.000000000000003 86
ENST00000413440 PRDM2-003 protein_coding Homo_sapiens 0 4021
ENST00000484063 PRDM2-010 protein_coding Homo_sapiens 0 671
ENST00000491134 PRDM2-007 nonsense_mediated_decay Homo_sapiens 0 436
ENST00000491815 PRDM2-008 retained_intron Homo_sapiens 1e-39 167
ENST00000502724 PRDM2-013 processed_transcript Homo_sapiens 0 438
ENST00000502727 PRDM2-012 processed_transcript Homo_sapiens 0 494
ENST00000503842 PRDM2-011 protein_coding Homo_sapiens 0 239
ENST00000505823 PRDM2-015 protein_coding Homo_sapiens 0 239

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