C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chloride channel, voltage-sensitive 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000376088 CLCN5-001 ENSG00000171365 9606 + X:49922615-50099235 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLiverLungMuscleOvaryPlacentaENST00000376088
Transcript ID Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000376088 0.200±0.00 1.306±0.00 0.122±0.00 0.632±0.11 0.388±0.00 0.610±0.34 0.373±0.09

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005247 IEA voltage-gated chloride channel activity
GO:0005254 TAS chloride channel activity
GO:0005524 IEA ATP binding
GO:0005765 IDA lysosomal membrane
GO:0005768 IEA endosome
GO:0005794 IEA Golgi apparatus
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS transport
GO:0006821 IEA chloride transport
GO:0006897 IEA endocytosis
GO:0007588 TAS excretion
GO:0010008 TAS endosome membrane
GO:0015297 IEA antiporter activity
GO:0016020 IDA:IEA membrane
GO:0034220 TAS ion transmembrane transport
GO:0044070 IEA regulation of anion transport
GO:0045177 IDA apical part of cell
GO:0055085 TAS:IEA transmembrane transport
GO:1902476 TAS chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004428 Clcn5-001 protein_coding Mus_musculus 0 4087
ENSMUST00000115746 Clcn5-004 protein_coding Mus_musculus 0 3666
ENSMUST00000154382 Clcn5-002 retained_intron Mus_musculus 0 2150
ENSMUST00000128319 Clcn5-003 protein_coding Mus_musculus 0 970
ENSMUST00000134412 Serf2-002 retained_intron Mus_musculus 0.00005 57
ENSMUST00000139253 Serf2-001 protein_coding Mus_musculus 0.00005 57
ENSMUST00000152666 Pnisr-003 processed_transcript Mus_musculus 0.00005 57

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