C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: synaptophysin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000376303 SYP-003 ENSG00000102003 9606 - X:49189253-49200193 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverPlacentaENST00000376303
Transcript ID Liver Placenta
ENST00000376303 0.282±0.00 0.343±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0006810 IEA transport
GO:0008021 IEA synaptic vesicle
GO:0016020 IEA membrane
GO:0048168 IEA regulation of neuronal synaptic plasticity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000069520 Syp-001 protein_coding Mus_musculus 0 957
ENSMUST00000149795 Syp-002 retained_intron Mus_musculus 0 531
ENSMUST00000134355 Syp-006 retained_intron Mus_musculus 0 298
ENSMUST00000128890 Syp-003 protein_coding Mus_musculus 0 265
ENSMUST00000150572 Syp-004 processed_transcript Mus_musculus 0 248
ENSMUST00000137515 Syp-005 retained_intron Mus_musculus 8.99634e-43 178

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