C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leukocyte cell derived chemotaxin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377962 LECT1-001 ENSG00000136110 9606 - 13:52703269-52739780 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLungPlacentaTestisENST00000377962
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Lung Placenta Testis
ENST00000377962 0.008±0.00 0.030±0.00 0.439±0.00 0.007±0.00 0.026±0.02 0.092±0.00 0.132±0.00 0.035±0.02 0.920±0.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MD CIL_0000MD_0001 CGP 13:52652709-52739812
CIL_0000ME CIL_0000ME_0001 CGP 13:52703264-52848641

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 TAS skeletal system development
GO:0001886 IEA endothelial cell morphogenesis
GO:0001937 IEA negative regulation of endothelial cell proliferation
GO:0005578 IEA proteinaceous extracellular matrix
GO:0006029 TAS proteoglycan metabolic process
GO:0016021 IEA integral component of membrane
GO:0016525 IDA negative regulation of angiogenesis
GO:0030948 IEA negative regulation of vascular endothelial growth factor receptor signaling pathway
GO:0051216 IEA cartilage development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022603 Lect1-001 protein_coding Mus_musculus 0 1110
ENSMUST00000165835 Lect1-002 protein_coding Mus_musculus 0 1061
ENSMUST00000165204 Lect1-004 retained_intron Mus_musculus 0 449

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