C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fibroblast growth factor 1 (acidic)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000378046 FGF1-008 ENSG00000113578 9606 - 5:142593369-142685672 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonLiverMuscleOvaryPlacentaTestisENST00000378046
Transcript ID Breast Colon Liver Muscle Ovary Placenta Testis
ENST00000378046 0.434±0.00 0.220±0.00 0.016±0.00 0.288±0.00 0.096±0.00 0.296±0.15 0.137±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007W6 CIL_0007W6_0001 VISTA 5:142250490-142852711

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0005104 IEA:IPI fibroblast growth factor receptor binding
GO:0005515 IPI protein binding
GO:0005576 IDA extracellular region
GO:0005615 IDA extracellular space
GO:0005634 IDA nucleus
GO:0005829 IDA cytosol
GO:0007165 NAS signal transduction
GO:0007173 TAS epidermal growth factor receptor signaling pathway
GO:0007275 TAS multicellular organismal development
GO:0008083 IDA:IEA growth factor activity
GO:0008201 IDA heparin binding
GO:0008284 IGI positive regulation of cell proliferation
GO:0008286 TAS insulin receptor signaling pathway
GO:0008543 IEA:IPI fibroblast growth factor receptor signaling pathway
GO:0009653 TAS anatomical structure morphogenesis
GO:0030154 IEA cell differentiation
GO:0030335 IDA positive regulation of cell migration
GO:0034605 IDA cellular response to heat
GO:0038095 TAS Fc-epsilon receptor signaling pathway
GO:0044548 IPI S100 protein binding
GO:0045087 TAS innate immune response
GO:0045542 IDA positive regulation of cholesterol biosynthetic process
GO:0045766 IDA positive regulation of angiogenesis
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048011 TAS neurotrophin TRK receptor signaling pathway
GO:0048015 TAS phosphatidylinositol-mediated signaling
GO:0051781 IDA positive regulation of cell division
GO:0060681 IDA branch elongation involved in ureteric bud branching
GO:0072163 IDA mesonephric epithelium development
GO:1902533 IDA positive regulation of intracellular signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115582 Fgf1-002 protein_coding Mus_musculus 0 737
ENSMUST00000040647 Fgf1-001 protein_coding Mus_musculus 0 737
ENSMUST00000131348 Fgf1-003 nonsense_mediated_decay Mus_musculus 0 497
ENSMUST00000139972 Fgf1-004 protein_coding Mus_musculus 0 329
ENSMUST00000147607 Fgf1-005 retained_intron Mus_musculus 0 291
ENSMUST00000117566 Fgf1-007 protein_coding Mus_musculus 0 268

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