C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: protocadherin alpha 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000378122 PCDHA9-002 ENSG00000204961 9606 + 5:140847772-140854671 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENST00000378122
Transcript ID Muscle
ENST00000378122 0.015±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115661 Pcdha10-208 protein_coding Mus_musculus 0 1570
ENSMUST00000115658 Pcdha10-206 protein_coding Mus_musculus 0 1454
ENSMUST00000115657 Pcdha10-205 protein_coding Mus_musculus 0 904
ENSMUST00000070797 Pcdha10-204 protein_coding Mus_musculus 0 889
ENSMUST00000115659 Pcdha10-207 protein_coding Mus_musculus 0 848
ENSMUST00000115662 Pcdha10-209 protein_coding Mus_musculus 0 532
ENSMUST00000047614 Pcdha10-203 protein_coding Mus_musculus 0 492
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0000000001 75
ENSMUST00000024742 Nfkbie-201 protein_coding Mus_musculus 0.0000008 62

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