C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin alpha 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115661 Pcdha10-208 ENSMUSG00000007440 10090 + 18:36952766-37185256 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverOvaryENSMUST00000115661
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Ovary
ENSMUST00000115661 0.412±0.15 0.331±0.02 0.151±0.05 0.188±0.06 0.035±0.00 0.010±0.00 0.208±0.07

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000252085 PCDHGA12-001 protein_coding Homo_sapiens 0 571
ENST00000252087 PCDHGC5-001 protein_coding Homo_sapiens 0 571
ENST00000253812 PCDHGA3-001 protein_coding Homo_sapiens 0 571
ENST00000289272 PCDHA13-003 protein_coding Homo_sapiens 0 490
ENST00000306593 PCDHGC4-001 protein_coding Homo_sapiens 0 571
ENST00000307360 PCDHA10-002 protein_coding Homo_sapiens 0 863
ENST00000308177 PCDHGC3-001 protein_coding Homo_sapiens 0 573
ENST00000356878 PCDHA7-002 protein_coding Homo_sapiens 0 1506
ENST00000378122 PCDHA9-002 protein_coding Homo_sapiens 0 1570
ENST00000378123 PCDHA8-002 protein_coding Homo_sapiens 0 959
ENST00000378125 PCDHA4-201 protein_coding Homo_sapiens 0 1962
ENST00000378126 PCDHA6-003 protein_coding Homo_sapiens 0 896
ENST00000378132 PCDHA2-003 protein_coding Homo_sapiens 0 870
ENST00000378133 PCDHA1-003 protein_coding Homo_sapiens 0 939
ENST00000394576 PCDHGA2-001 protein_coding Homo_sapiens 0 571
ENST00000394633 PCDHA1-001 protein_coding Homo_sapiens 0 398
ENST00000398587 PCDHGA11-001 protein_coding Homo_sapiens 0 571
ENST00000398594 PCDHGB7-001 protein_coding Homo_sapiens 0 571
ENST00000398604 PCDHGA8-001 protein_coding Homo_sapiens 0 571
ENST00000398610 PCDHGA10-001 protein_coding Homo_sapiens 0 568
ENST00000398631 PCDHA12-001 protein_coding Homo_sapiens 0 926
ENST00000398640 PCDHA11-001 protein_coding Homo_sapiens 0 891
ENST00000409494 PCDHA13-002 protein_coding Homo_sapiens 0 490
ENST00000504120 PCDHA1-002 protein_coding Homo_sapiens 0 939
ENST00000506751 PCDHA14-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 313
ENST00000506939 PCDHA10-001 protein_coding Homo_sapiens 0 520
ENST00000512229 PCDHA4-002 protein_coding Homo_sapiens 0 2063
ENST00000517417 PCDHGA1-001 protein_coding Homo_sapiens 0 571
ENST00000517434 PCDHGA6-001 protein_coding Homo_sapiens 0 571
ENST00000518069 PCDHGA5-001 protein_coding Homo_sapiens 0 571
ENST00000518325 PCDHGA7-001 protein_coding Homo_sapiens 0 571
ENST00000518882 PCDHGA11-003 protein_coding Homo_sapiens 0 532
ENST00000519479 PCDHGB4-001 protein_coding Homo_sapiens 0 571
ENST00000520672 PCDHA2-002 protein_coding Homo_sapiens 0 870
ENST00000520790 PCDHGB6-001 protein_coding Homo_sapiens 0 569
ENST00000522353 PCDHA3-001 protein_coding Homo_sapiens 0 1266
ENST00000522605 PCDHGB2-001 protein_coding Homo_sapiens 0 573
ENST00000523390 PCDHGB1-001 protein_coding Homo_sapiens 0 568
ENST00000525929 PCDHA7-001 protein_coding Homo_sapiens 0 1506
ENST00000526136 PCDHA2-001 protein_coding Homo_sapiens 0 870
ENST00000527624 PCDHA6-002 protein_coding Homo_sapiens 0 499
ENST00000529310 PCDHA6-001 protein_coding Homo_sapiens 0 896
ENST00000529619 PCDHA5-002 protein_coding Homo_sapiens 0 889
ENST00000529859 PCDHA5-001 protein_coding Homo_sapiens 0 889
ENST00000530339 PCDHA4-001 protein_coding Homo_sapiens 0 2045
ENST00000531613 PCDHA8-001 protein_coding Homo_sapiens 0 959
ENST00000532566 PCDHA3-002 protein_coding Homo_sapiens 0 1266
ENST00000532602 PCDHA9-001 protein_coding Homo_sapiens 0 1570
ENST00000562220 PCDHA10-003 protein_coding Homo_sapiens 0 863
ENST00000571252 PCDHGA4-001 protein_coding Homo_sapiens 0 571
ENST00000573521 PCDHGA9-001 protein_coding Homo_sapiens 0 569
ENST00000576222 PCDHGB3-001 protein_coding Homo_sapiens 0 575
ENST00000612467 PCDHGA3-003 nonsense_mediated_decay Homo_sapiens 0 532
ENST00000613593 PCDHA12-002 protein_coding Homo_sapiens 0 926
ENST00000614258 PCDHA5-003 protein_coding Homo_sapiens 0 889
ENST00000616325 PCDHA11-002 protein_coding Homo_sapiens 0 891
ENST00000617222 PCDHGC3-006 protein_coding Homo_sapiens 0 566
ENST00000617380 PCDHGB5-001 protein_coding Homo_sapiens 0 569
ENST00000617641 PCDHGC3-002 protein_coding Homo_sapiens 0 569
ENST00000617769 PCDHA13-001 protein_coding Homo_sapiens 0 490
ENST00000618371 PCDHGC4-004 protein_coding Homo_sapiens 0 573
ENST00000618834 PCDHA4-003 protein_coding Homo_sapiens 0 2041
ENST00000622656 PCDHGC3-007 processed_transcript Homo_sapiens 0 220

Loading