C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Spi-1 proto-oncogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000378538 SPI1-001 ENSG00000066336 9606 - 11:47354860-47378576 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000378538
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000378538 22.786±0.00 25.464±0.00 0.828±0.00 2.516±1.52 5.025±1.77 2.908±1.89 2.365±1.84 2.622±1.83 3.667±2.97 29.372±23.78 0.383±0.00 7.436±8.03 28.891±12.90 3.895±3.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LM CIL_0002LM_0002 CGP 11:47354860-47416501

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0000980 ISS RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001047 IDA core promoter binding
GO:0001085 ISS RNA polymerase II transcription factor binding
GO:0003700 IDA:IEA sequence-specific DNA binding transcription factor activity
GO:0003705 ISS RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0043565 IEA sequence-specific DNA binding
GO:0043966 IMP histone H3 acetylation
GO:0044027 IDA hypermethylation of CpG island
GO:0045646 IMP regulation of erythrocyte differentiation
GO:0045814 IDA negative regulation of gene expression, epigenetic
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0051525 ISS NFAT protein binding
GO:0090241 IMP negative regulation of histone H4 acetylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000002180 Spi1-001 protein_coding Mus_musculus 0 1314
ENSMUST00000132741 Spi1-002 protein_coding Mus_musculus 0 257
ENSDART00000036729 spi1b-201 protein_coding Danio_rerio 0 246
ENSDART00000093279 spi1b-202 protein_coding Danio_rerio 0 246
ENSDART00000126831 spi1b-203 protein_coding Danio_rerio 0 246

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