C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CDK5 regulatory subunit associated protein 1-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000378610 CDKAL1-001 ENSG00000145996 9606 + 6:20546341-21232404 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000378610
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000378610 1.390±0.00 1.014±0.00 0.771±0.16 2.482±0.00 0.427±0.00 0.347±0.00 2.075±0.00 0.385±0.00 0.703±0.00 0.571±0.00 3.332±0.00 0.726±0.00 0.818±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003824 IEA catalytic activity
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0009451 IEA RNA modification
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016740 IEA transferase activity
GO:0043412 IEA macromolecule modification
GO:0046872 IEA metal ion binding
GO:0051536 IEA iron-sulfur cluster binding
GO:0051539 IEA 4 iron, 4 sulfur cluster binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000006353 Cdkal1-001 protein_coding Mus_musculus 0 1888
ENSMUST00000140278 Cdkal1-007 nonsense_mediated_decay Mus_musculus 0 1849
ENSMUST00000131792 Cdkal1-003 retained_intron Mus_musculus 0 1476
ENSMUST00000153086 Cdkal1-006 retained_intron Mus_musculus 0 1242
ENSMUST00000137225 Cdkal1-008 nonsense_mediated_decay Mus_musculus 0 723
ENSMUST00000123641 Cdkal1-011 retained_intron Mus_musculus 0 606
ENSMUST00000154209 Cdkal1-002 protein_coding Mus_musculus 0 383
ENSMUST00000124532 Cdkal1-010 protein_coding Mus_musculus 0 315
ENSMUST00000129231 Cdkal1-009 nonsense_mediated_decay Mus_musculus 0 309
ENSMUST00000091674 Cdkal1-004 protein_coding Mus_musculus 0 309
ENSMUST00000110323 Cdkal1-005 protein_coding Mus_musculus 5e-40 171

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