C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Fanconi anemia, complementation group G
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000378643 FANCG-001 ENSG00000221829 9606 - 9:35073838-35080016 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000378643
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000378643 1.217±0.00 0.078±0.00 0.416±0.00 1.575±0.00 0.570±0.00 2.472±0.00 0.204±0.07 2.162±0.00 0.505±0.00 4.666±0.65 2.438±0.72 3.614±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SF CIL_0005SF_0001 CGP 9:35056064-35080016
CIL_0005SE CIL_0005SE_0001 CGP 9:35073835-35096601

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000075 TAS cell cycle checkpoint
GO:0000160 IEA phosphorelay signal transduction system
GO:0001541 IEA ovarian follicle development
GO:0003684 TAS damaged DNA binding
GO:0004871 IEA signal transducer activity
GO:0005515 IPI:IEA protein binding
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005886 IDA plasma membrane
GO:0006281 TAS DNA repair
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0007005 IMP mitochondrion organization
GO:0007286 IEA spermatid development
GO:0009314 IEA response to radiation
GO:0043240 IDA Fanconi anaemia nuclear complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030165 Fancg-001 protein_coding Mus_musculus 0 1288
ENSMUST00000123332 Fancg-002 retained_intron Mus_musculus 0 918
ENSMUST00000124645 Fancg-006 processed_transcript Mus_musculus 0 490
ENSMUST00000127067 Fancg-010 processed_transcript Mus_musculus 0 427
ENSMUST00000134083 Fancg-005 processed_transcript Mus_musculus 0 305
ENSMUST00000125570 Fancg-008 processed_transcript Mus_musculus 0 294

Loading