C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005SF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000165280-ENSG00000221829 CGP 9606 9:35056064-35080016
GeneTranscriptPositionBiotype
ENSG00000165280 (VCP)
valosin containing protein 		ENST00000358901 (VCP-001) 35056064-35073249 protein_coding
ENST00000417448 (VCP-004) 35065346-35072014 protein_coding
ENST00000448530 (VCP-006) 35064246-35072627 protein_coding
ENST00000466100 (VCP-002) 35057173-35057833 retained_intron
ENST00000479300 (VCP-003) 35059061-35059892 retained_intron
ENST00000480327 (VCP-007) 35059748-35061630 retained_intron
ENST00000493886 (VCP-005) 35056870-35072549 retained_intron
ENSG00000221829 (FANCG)
Fanconi anemia, complementation group G 		ENST00000378643 (FANCG-001) 35073838-35080016 protein_coding
ENST00000425676 (FANCG-005) 35073835-35079693 nonsense_mediated_decay
ENST00000448890 (FANCG-003) 35077265-35079942 protein_coding
ENST00000461149 (FANCG-007) 35077998-35078646 retained_intron
ENST00000462124 (FANCG-004) 35078602-35079669 retained_intron
ENST00000474894 (FANCG-006) 35076141-35076852 retained_intron
ENST00000476212 (FANCG-002) 35073839-35076565 processed_transcript
ENST00000481254 (FANCG-008) 35074779-35075509 retained_intron
CIL_0005SF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028452-ENSMUSG00000028453 CGP 10090 4:42979963-43010506
GeneTranscriptPositionBiotype
ENSMUSG00000028451 (1700022I11Rik)
RIKEN cDNA 1700022I11 gene 		ENSMUST00000030163 (1700022I11Rik-001) 42969946-42974326 protein_coding
ENSMUST00000139127 (1700022I11Rik-002) 42969946-42983640 nonsense_mediated_decay
ENSMUST00000185904 (1700022I11Rik-004) 42969631-42971298 protein_coding
ENSMUST00000189414 (1700022I11Rik-005) 42969604-42971332 processed_transcript
ENSMUST00000190902 (1700022I11Rik-003) 42969934-42971488 protein_coding
ENSMUSG00000028452 (Vcp)
valosin containing protein 		ENSMUST00000030164 (Vcp-001) 42979963-43000507 protein_coding
ENSMUST00000139843 (Vcp-003) 42992735-42993758 processed_transcript
ENSMUST00000148182 (Vcp-002) 42993712-43000433 processed_transcript
ENSMUST00000154423 (Vcp-005) 42986242-42989330 processed_transcript
ENSMUST00000154541 (Vcp-004) 42984366-42985821 processed_transcript
ENSMUSG00000028453 (Fancg)
Fanconi anemia, complementation group G 		ENSMUST00000030165 (Fancg-001) 43002343-43010355 protein_coding
ENSMUST00000123332 (Fancg-002) 43002343-43010488 retained_intron
ENSMUST00000124645 (Fancg-006) 43003011-43006466 processed_transcript
ENSMUST00000125570 (Fancg-008) 43003913-43006779 processed_transcript
ENSMUST00000127067 (Fancg-010) 43003260-43006511 processed_transcript
ENSMUST00000132273 (Fancg-003) 43010043-43010506 processed_transcript
ENSMUST00000133915 (Fancg-009) 43009158-43010222 retained_intron
ENSMUST00000134083 (Fancg-005) 43005221-43009153 processed_transcript
ENSMUST00000135362 (Fancg-004) 43009067-43010170 retained_intron
ENSMUST00000148018 (Fancg-007) 43002922-43003932 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005SF_0001ENSG00000165280ENST00000358901ENST00000417448ENST00000448530ENST00000466100ENST00000479300ENST00000480327ENST00000493886ENSG00000221829ENST00000378643ENST00000425676ENST00000448890ENST00000461149ENST00000462124ENST00000474894ENST00000476212ENST00000481254CIL_0005SF_0002ENSMUSG00000028451ENSMUST00000030163ENSMUST00000139127ENSMUST00000185904ENSMUST00000189414ENSMUST00000190902ENSMUSG00000028452ENSMUST00000030164ENSMUST00000139843ENSMUST00000148182ENSMUST00000154423ENSMUST00000154541ENSMUSG00000028453ENSMUST00000030165ENSMUST00000123332ENSMUST00000124645ENSMUST00000125570ENSMUST00000127067ENSMUST00000132273ENSMUST00000133915ENSMUST00000134083ENSMUST00000135362ENSMUST00000148018
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005SF_0001ENSG00000165280ENST00000358901ENST00000479300ENST00000493886ENSG00000221829ENST00000378643ENST00000425676ENST00000476212ENST00000481254CIL_0005SF_0002ENSMUSG00000028451ENSMUST00000030163ENSMUSG00000028452ENSMUST00000030164ENSMUST00000148182ENSMUST00000154541ENSMUSG00000028453ENSMUST00000030165ENSMUST00000123332ENSMUST00000124645ENSMUST00000125570ENSMUST00000127067ENSMUST00000134083ENSMUST00000135362
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000165280 ENST00000358901 10.417±0.00 8.562±0.00 N/A 6.114±2.57 6.576±2.55 4.700±0.00 10.065±4.98 6.339±0.10 5.029±0.00 9.592±0.00 13.159±0.60 20.217±10.37 18.308±4.93 8.943±0.32
ENST00000417448 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448530 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466100 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479300 N/A N/A 27.036±0.00 N/A 38.458±0.00 41.428±0.00 N/A 23.715±0.00 21.897±0.00 32.449±0.00 41.876±0.00 N/A N/A N/A
ENST00000480327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493886 63.610±0.00 59.252±0.00 8.641±0.00 26.492±12.57 39.373±24.57 26.798±12.52 37.406±25.59 37.512±22.71 32.425±19.62 35.168±21.53 53.319±31.26 49.823±31.83 86.504±33.49 68.775±8.59
ENSG00000221829 ENST00000378643 N/A 1.217±0.00 N/A 0.078±0.00 0.416±0.00 1.575±0.00 0.570±0.00 2.472±0.00 0.204±0.07 2.162±0.00 0.505±0.00 4.666±0.65 2.438±0.72 3.614±0.01
ENST00000425676 0.434±0.00 1.632±0.00 N/A 1.048±0.27 1.284±0.00 0.806±0.63 0.154±0.00 0.317±0.00 0.390±0.00 N/A N/A 3.487±2.01 2.515±0.00 N/A
ENST00000448890 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461149 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462124 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476212 N/A N/A N/A N/A N/A 2.646±0.00 N/A N/A 0.320±0.00 N/A 1.084±0.00 N/A N/A N/A
ENST00000481254 N/A N/A N/A N/A N/A N/A 0.128±0.00 N/A N/A N/A N/A 3.847±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028451 ENSMUST00000030163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.503±0.00
ENSMUST00000139127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189414 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190902 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000028452 ENSMUST00000030164 51.198±5.45 44.913±4.49 56.812±4.16 49.773±26.15 55.820±17.33 43.938±7.59 46.210±12.61 56.111±11.64 58.767±12.86 62.508±1.93 108.914±5.28 95.698±26.15 85.044±41.32 38.397±13.75
ENSMUST00000139843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148182 N/A 198.833±86.88 N/A N/A 212.825±9.05 124.926±45.59 N/A 94.613±0.00 59.361±23.61 120.187±6.77 N/A 260.468±75.93 N/A N/A
ENSMUST00000154423 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154541 N/A N/A N/A 21.118±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 29.476±0.00 N/A
ENSMUSG00000028453 ENSMUST00000030165 2.724±0.75 1.692±0.66 2.776±0.50 3.457±2.58 2.771±0.49 2.931±0.77 0.708±0.37 1.706±0.20 2.403±2.02 2.250±0.30 0.394±0.08 1.837±0.82 3.210±1.09 14.948±0.40
ENSMUST00000123332 N/A 0.507±0.13 0.789±0.11 4.544±0.00 1.031±0.17 1.010±0.21 N/A 0.407±0.00 1.033±0.01 0.714±0.00 0.221±0.06 0.733±0.19 0.447±0.23 10.922±0.44
ENSMUST00000124645 N/A 2.174±0.00 N/A 2.380±0.00 N/A N/A N/A N/A N/A N/A 0.598±0.00 4.128±0.89 0.940±0.00 8.004±0.00
ENSMUST00000125570 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.952±0.00 N/A N/A N/A
ENSMUST00000127067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.296±0.00 N/A 2.092±0.64 N/A
ENSMUST00000132273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134083 N/A N/A N/A N/A 4.071±0.93 2.746±0.00 N/A N/A 0.650±0.00 3.052±0.00 0.177±0.00 2.369±0.00 N/A N/A
ENSMUST00000135362 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.534±0.00 N/A
ENSMUST00000148018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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