C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ras association (RalGDS/AF-6) domain family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379400 RASSF2-001 ENSG00000101265 9606 - 20:4780023-4823645 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000379400
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000379400 7.368±0.00 4.105±0.00 52.915±0.00 2.408±0.12 2.822±0.00 1.557±0.00 0.903±0.00 1.702±0.54 6.363±2.92 5.537±4.77 1.802±0.00 11.647±9.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004S5 CIL_0004S5_0001 CGP 20:4780023-5010293

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IEA skeletal system development
GO:0001503 IEA ossification
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0007049 IEA cell cycle
GO:0007165 IEA signal transduction
GO:0038168 IEA epidermal growth factor receptor signaling pathway via I-kappaB kinase/NF-kappaB cascade
GO:0045667 IEA regulation of osteoblast differentiation
GO:0045670 IEA regulation of osteoclast differentiation
GO:0046849 IEA bone remodeling
GO:0048872 IEA homeostasis of number of cells
GO:1901222 IEA regulation of NIK/NF-kappaB signaling
GO:1901223 IEA negative regulation of NIK/NF-kappaB signaling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103182 Rassf2-005 protein_coding Mus_musculus 0 1164
ENSMUST00000028814 Rassf2-001 protein_coding Mus_musculus 0 1164
ENSMUST00000139047 Rassf2-003 protein_coding Mus_musculus 0 701
ENSMUST00000155829 Rassf2-002 retained_intron Mus_musculus 0 586
ENSMUST00000148884 Blzf1-004 retained_intron Mus_musculus 0.00000005 66
ENSMUST00000111336 Sdhc-001 protein_coding Mus_musculus 0.00003 57

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