C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily C, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379705 TRPC4-001 ENSG00000133107 9606 - 13:37636636-37870425 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartLungOvaryPlacentaENST00000379705
Transcript ID Adrenal Brain Colon Heart Lung Ovary Placenta
ENST00000379705 0.103±0.00 0.221±0.00 0.137±0.07 0.031±0.00 2.002±0.00 0.500±0.03 0.275±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CR CIL_0006CR_0002 CGP 13:37562583-37870425
CIL_0006CS CIL_0006CS_0002 CGP 13:37636636-38363619

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005515 IPI:IEA protein binding
GO:0005886 IDA plasma membrane
GO:0005901 IEA caveola
GO:0005911 IDA cell-cell junction
GO:0006811 IEA ion transport
GO:0006816 TAS calcium ion transport
GO:0007411 TAS axon guidance
GO:0008013 IPI beta-catenin binding
GO:0009986 IDA cell surface
GO:0014051 IEA gamma-aminobutyric acid secretion
GO:0015279 IMP store-operated calcium channel activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016323 IDA basolateral plasma membrane
GO:0030863 IDA cortical cytoskeleton
GO:0034220 TAS ion transmembrane transport
GO:0034704 IDA calcium channel complex
GO:0043234 IEA protein complex
GO:0045121 IEA membrane raft
GO:0045296 IPI cadherin binding
GO:0048709 IEA oligodendrocyte differentiation
GO:0055085 TAS:IEA transmembrane transport
GO:0070509 IDA calcium ion import
GO:0070588 TAS calcium ion transmembrane transport
GO:0070679 IEA inositol 1,4,5 trisphosphate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029311 Trpc4-201 protein_coding Mus_musculus 0 3688

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