C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily C, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029311 Trpc4-201 ENSMUSG00000027748 10090 + 3:54156057-54318470 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029311
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029311 1.368±1.35 0.070±0.05 0.309±0.02 2.513±1.05 0.055±0.04 0.235±0.11 0.027±0.01 0.099±0.02 0.014±0.01 0.012±0.00 0.037±0.03 1.191±0.48 0.171±0.13 0.033±0.03

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0005901 IDA caveola
GO:0005911 IEA cell-cell junction
GO:0008013 IEA beta-catenin binding
GO:0009986 IEA cell surface
GO:0014051 IMP gamma-aminobutyric acid secretion
GO:0015279 IMP store-operated calcium channel activity
GO:0016323 IEA basolateral plasma membrane
GO:0030863 IEA cortical cytoskeleton
GO:0034704 IEA calcium channel complex
GO:0043234 IPI protein complex
GO:0045121 IDA membrane raft
GO:0045296 IEA cadherin binding
GO:0048709 IMP oligodendrocyte differentiation
GO:0070509 IEA calcium ion import
GO:0070588 IEA calcium ion transmembrane transport
GO:0070679 IDA inositol 1,4,5 trisphosphate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000089604 trpc4b-201 protein_coding Danio_rerio 0 1266
ENSDART00000154715 trpc4b-001 protein_coding Danio_rerio 0 1266
ENSDART00000086115 trpc5b-201 protein_coding Danio_rerio 0 412
ENSDART00000148115 trpc5b-001 protein_coding Danio_rerio 0 412
ENSDART00000141770 trpc5b-002 nonsense_mediated_decay Danio_rerio 0 411
ENST00000262839 TRPC5-001 protein_coding Homo_sapiens 0 974
ENST00000338947 TRPC4-201 protein_coding Homo_sapiens 0 2630
ENST00000355779 TRPC4-002 protein_coding Homo_sapiens 0 2730
ENST00000358477 TRPC4-003 protein_coding Homo_sapiens 0 2843
ENST00000379673 TRPC4-004 protein_coding Homo_sapiens 0 2350
ENST00000379679 TRPC4-006 protein_coding Homo_sapiens 0 2499
ENST00000379705 TRPC4-001 protein_coding Homo_sapiens 0 3688
ENST00000426868 TRPC4-202 protein_coding Homo_sapiens 0 1738
ENST00000488717 TRPC4-005 nonsense_mediated_decay Homo_sapiens 0 1986
ENST00000494529 TRPC4-007 processed_transcript Homo_sapiens 0 486

Loading