C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006CS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000070507-ENSDARG00000043857 CGP 7955 10:26463714-26596488
GeneTranscriptPositionBiotype
ENSDARG00000043857 (ufm1)
ubiquitin-fold modifier 1 		ENSDART00000064393 (ufm1-001) 26582376-26596488 protein_coding
ENSDART00000138516 (ufm1-002) 26582672-26595178 processed_transcript
ENSDARG00000070507 (TRPC4 (2 of 2))
transient receptor potential cation channel, subfamily C, member 4 		ENSDART00000080789 (TRPC4 (2 of 2)-201) 26463714-26486932 protein_coding
CIL_0006CS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000133107-ENSG00000120686 CGP 9606 13:37636636-38363619
GeneTranscriptPositionBiotype
ENSG00000120686 (UFM1)
ubiquitin-fold modifier 1 		ENST00000239878 (UFM1-001) 38349881-38363619 protein_coding
ENST00000379649 (UFM1-003) 38349851-38361125 protein_coding
ENST00000437952 (UFM1-005) 38349996-38359781 protein_coding
ENST00000464423 (UFM1-004) 38349886-38354558 retained_intron
ENST00000494372 (UFM1-002) 38349849-38354885 retained_intron
ENSG00000133107 (TRPC4)
transient receptor potential cation channel, subfamily C, member 4 		ENST00000338947 (TRPC4-201) 37636641-37869802 protein_coding
ENST00000355779 (TRPC4-002) 37636865-37869802 protein_coding
ENST00000358477 (TRPC4-003) 37636865-37869802 protein_coding
ENST00000379673 (TRPC4-004) 37636865-37869802 protein_coding
ENST00000379679 (TRPC4-006) 37636843-37783333 protein_coding
ENST00000379705 (TRPC4-001) 37636636-37870425 protein_coding
ENST00000426868 (TRPC4-202) 37636843-37869723 protein_coding
ENST00000488717 (TRPC4-005) 37636843-37783333 nonsense_mediated_decay
ENST00000494529 (TRPC4-007) 37663428-37674370 processed_transcript
ENSG00000223685 (LINC00571)
long intergenic non-protein coding RNA 571 		ENST00000434565 (LINC00571-001) 38050817-38143232 lincRNA
ENST00000451826 (LINC00571-002) 38053920-38061453 lincRNA
ENST00000454060 (LINC00571-003) 38053698-38061448 lincRNA
ENSG00000228036 (HSPD1P9)
heat shock 60kDa protein 1 (chaperonin) pseudogene 9 		ENST00000420325 (HSPD1P9-001) 37993085-37994720 processed_pseudogene
ENSG00000274317 (RP11-93G5.1)
 ENST00000617568 (RP11-93G5.1-001) 37934565-38048169 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006CS_0001ENSDARG00000043857ENSDART00000064393ENSDART00000138516ENSDARG00000070507ENSDART00000080789CIL_0006CS_0002ENSG00000120686ENST00000239878ENST00000379649ENST00000437952ENST00000464423ENST00000494372ENSG00000133107ENST00000338947ENST00000355779ENST00000358477ENST00000379673ENST00000379679ENST00000379705ENST00000426868ENST00000488717ENST00000494529ENSG00000223685ENST00000434565ENST00000451826ENST00000454060ENSG00000228036ENST00000420325ENSG00000274317ENST00000617568
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006CS_0001ENSDARG00000043857ENSDART00000064393ENSDART00000138516ENSDARG00000070507ENSDART00000080789CIL_0006CS_0002ENSG00000120686ENST00000239878ENST00000379649ENSG00000133107ENST00000338947ENST00000355779ENST00000358477ENST00000379673ENST00000379679ENST00000379705ENST00000426868ENST00000488717ENST00000494529ENSG00000223685ENST00000434565ENST00000451826ENST00000454060ENSG00000228036ENST00000420325ENSG00000274317ENST00000617568
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000043857 ENSDART00000064393 N/A N/A N/A 8.083±4.68 N/A N/A 5.903±2.03 7.231±0.00 0.715±0.00 N/A 3.307±0.00 N/A N/A N/A
ENSDART00000138516 N/A N/A N/A 14.845±4.11 N/A N/A 4.674±1.11 20.024±0.00 1.192±0.00 N/A 4.335±0.00 N/A N/A N/A
ENSDARG00000070507 ENSDART00000080789 N/A N/A N/A 1.679±1.55 N/A N/A 0.026±0.00 0.465±0.17 N/A N/A 0.094±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000120686 ENST00000239878 N/A N/A 1.129±0.00 8.724±0.00 5.652±0.00 5.615±0.00 3.229±0.00 8.639±0.00 4.899±0.00 4.656±0.00 0.679±0.00 10.575±6.74 5.899±6.55 6.044±0.00
ENST00000379649 N/A N/A N/A N/A N/A 7.693±0.00 N/A N/A N/A N/A 0.701±0.00 N/A N/A N/A
ENST00000437952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464423 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494372 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000133107 ENST00000338947 N/A N/A N/A 0.746±0.00 0.501±0.00 0.372±0.00 N/A 0.266±0.00 N/A N/A N/A 0.105±0.01 0.299±0.15 N/A
ENST00000355779 N/A N/A N/A N/A N/A N/A 0.083±0.00 N/A 0.268±0.00 N/A N/A 0.099±0.08 N/A N/A
ENST00000358477 N/A N/A N/A 0.194±0.00 N/A N/A N/A N/A 0.317±0.00 0.224±0.00 N/A 0.029±0.00 0.994±0.00 N/A
ENST00000379673 N/A N/A 0.036±0.00 N/A N/A N/A 0.090±0.00 N/A N/A 0.585±0.00 0.028±0.00 N/A N/A N/A
ENST00000379679 0.135±0.00 N/A 0.116±0.00 N/A 0.085±0.00 0.332±0.00 0.156±0.00 N/A 0.013±0.00 N/A N/A N/A 0.245±0.00 0.253±0.00
ENST00000379705 N/A 0.103±0.00 N/A 0.221±0.00 N/A 0.137±0.07 0.031±0.00 N/A N/A 2.002±0.00 N/A 0.500±0.03 0.275±0.16 N/A
ENST00000426868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.126±0.09 0.250±0.00 N/A
ENST00000488717 N/A N/A N/A 0.387±0.00 N/A 0.104±0.00 N/A 0.191±0.00 N/A N/A N/A N/A 0.280±0.06 0.189±0.01
ENST00000494529 N/A N/A N/A N/A N/A N/A N/A 0.430±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000223685 ENST00000434565 0.072±0.00 0.199±0.00 0.252±0.00 0.128±0.05 N/A 0.137±0.00 N/A 0.266±0.09 0.163±0.06 0.368±0.00 N/A 0.091±0.03 0.164±0.00 0.053±0.01
ENST00000451826 N/A N/A N/A N/A 0.158±0.00 N/A N/A 0.316±0.00 0.166±0.00 N/A N/A 0.098±0.00 N/A N/A
ENST00000454060 N/A N/A 0.547±0.00 0.078±0.00 N/A N/A N/A N/A 0.121±0.00 N/A N/A 0.111±0.00 N/A 0.089±0.00
ENSG00000228036 ENST00000420325 N/A N/A 0.132±0.00 N/A 0.021±0.00 N/A 0.049±0.00 0.030±0.02 N/A 0.032±0.00 N/A N/A N/A 0.051±0.00
ENSG00000274317 ENST00000617568 0.036±0.00 0.057±0.00 0.446±0.00 0.022±0.02 0.038±0.01 0.028±0.00 0.203±0.00 0.183±0.18 0.037±0.01 0.045±0.02 0.039±0.00 0.038±0.04 0.007±0.00 0.031±0.00

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