C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: centromere protein B, 80kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379751 CENPB-001 ENSG00000125817 9606 - 20:3783851-3786690 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000379751
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000379751 63.308±0.00 61.165±0.00 1.929±0.00 24.607±20.89 33.745±29.42 28.267±24.95 14.403±11.63 22.896±18.82 13.126±7.09 18.187±15.45 42.306±32.71 48.228±41.43 34.259±4.35 22.811±16.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033B CIL_00033B_0001 CGP 20:3777504-3786690
CIL_000336 CIL_000336_0001 CGP 20:3783851-3806121

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000775 IDA:IEA chromosome, centromeric region
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003682 NAS:IEA chromatin binding
GO:0003696 NAS satellite DNA binding
GO:0005634 IDA:IEA nucleus
GO:0005694 IDA chromosome
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0019237 IC centromeric DNA binding
GO:0043565 TAS sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000089510 Cenpb-001 protein_coding Mus_musculus 0 2904

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