C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sperm flagellar 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379756 SPEF1-003 ENSG00000101222 9606 - 20:3777504-3781448 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLungOvaryTestisENST00000379756
Transcript ID Bladder Brain Breast Colon Heart Kidney Lung Ovary Testis
ENST00000379756 0.607±0.00 3.973±0.87 0.127±0.00 0.135±0.00 0.023±0.00 0.528±0.07 1.897±1.19 2.379±2.17 10.251±3.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033D CIL_00033D_0001 CGP 20:3753508-3781448
CIL_00033B CIL_00033B_0001 CGP 20:3777504-3786690

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005930 ISS axoneme
GO:0008150 ND biological_process
GO:0031514 IEA motile cilium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110218 Spef1-002 protein_coding Mus_musculus 0 798
ENSMUST00000028801 Spef1-001 protein_coding Mus_musculus 0 798
ENSMUST00000127987 Spef1-003 protein_coding Mus_musculus 0 505

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